| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 16,649,474 – 16,649,567 |
| Length | 93 |
| Max. P | 0.889432 |
| Location | 16,649,474 – 16,649,567 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 88.41 |
| Mean single sequence MFE | -18.62 |
| Consensus MFE | -16.29 |
| Energy contribution | -16.69 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.87 |
| SVM decision value | 0.96 |
| SVM RNA-class probability | 0.889432 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16649474 93 + 22407834 AAGCGGAAAAACAGUUGGCCAGCUGUCGGUGCUUUUGUGUU----UAUAAUUUAUUUAUUCAUCGGUUGGCUUAAGUUUUUGUUUUUUUUUGUUUUU ((((((((((((((..(((((((...(((((..(..(((..----.......)))..)..)))))))))))).......)))))))))..))))).. ( -19.50) >DroSec_CAF1 104271 82 + 1 AAGCGGAAAAACAGUUGGCCAGCUGUCGGUGCUUUUGUGUU----UAUAAUUUAUUUAUUCAUCGGUUGGCUUAAGUUUUUGUUU-----------U (((((((((.......(((((((...(((((..(..(((..----.......)))..)..))))))))))))....)))))))))-----------. ( -18.30) >DroSim_CAF1 106503 81 + 1 AAGCGGAAAAACAGUUGGCCAGCUGUCGGUGCUUUUGUGUU----UAUAAUUUAUUUAUUCAUCGGUUGGCUUAAGUUUGUGUU------------U (((((.(((.......(((((((...(((((..(..(((..----.......)))..)..))))))))))))....))).))))------------) ( -16.80) >DroEre_CAF1 105539 82 + 1 AAGCGACAAAACAGUUGGCCAGCUGUCGUUGCUUUUGUAUA----UAUAAUUUAUUUAUUCAUCGGUUGGCUUAAGUUUUUGUUU-----------U ....(((((((.....(((((((((....((..(..(((..----.......)))..)..)).))))))))).....))))))).-----------. ( -17.50) >DroYak_CAF1 103458 86 + 1 AAGCGAAAAAACAGUUGGCCAGCUGUCGGUGCUUCUGUAUAUAAAUAUAAUUCAUUUAUUCAUCGGUUGGCUUAAGUUUUUGUUU-----------U (((((((((.......(((((((((..(((((....))))((((((.......)))))).)..)))))))))....)))))))))-----------. ( -21.00) >consensus AAGCGGAAAAACAGUUGGCCAGCUGUCGGUGCUUUUGUGUU____UAUAAUUUAUUUAUUCAUCGGUUGGCUUAAGUUUUUGUUU___________U (((((((((.......(((((((((..((........(((......)))..........))..)))))))))....)))))))))............ (-16.29 = -16.69 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:39 2006