Locus 5892

Sequence ID 2L_DroMel_CAF1
Location 16,647,587 – 16,647,681
Length 94
Max. P 0.968857
window9348

overview

Window 8

Location 16,647,587 – 16,647,681
Length 94
Sequences 6
Columns 116
Reading direction reverse
Mean pairwise identity 78.56
Mean single sequence MFE -37.20
Consensus MFE -12.90
Energy contribution -13.57
Covariance contribution 0.67
Combinations/Pair 1.21
Mean z-score -3.71
Structure conservation index 0.35
SVM decision value 1.63
SVM RNA-class probability 0.968857
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16647587 94 - 22407834
GGCAUCCGAAUCGGAAUCGAAAUCAUAGCCUCAGCAUUGUCUG-GAUCUGUUUCGGG------------UUCUGGUUAUGGUUCUGGUUCUGGUUU---------GGCCACUGUCA
((((.((((((((((((((.((((((((((..(((.....(((-((.....))))))------------))..)))))))))).))))))))))))---------))....)))). ( -37.40)
>DroSec_CAF1 102413 82 - 1
GGCAUUCGAAUCGGAAUCGGAAUCAUAGCCUCAGCAUUGUCUG-GAUCUGUUUCGGG------------UUCUGG------------UUCUGGUUU---------GGCCACUGUCA
(((...((((((((((((((((((((((..((((......)))-)..))))....))------------))))))------------)))))))))---------))))....... ( -30.50)
>DroSim_CAF1 104637 88 - 1
GGCAUCCGAAUCGGAAUCGGAAUCAUAGCCUCAGCAUUGUCUG-GAUCUGUUUCGGG------------UUCUGG------UUCUGGUUCUGGUUU---------GGCCACUGUCA
((((.((((((((((((((((((((.((((((((.(((.....-))))))....)))------------)).)))------)))))))))))))))---------))....)))). ( -37.70)
>DroEre_CAF1 103624 106 - 1
GGCAUCGGAAUCGGAAUCGGAAUCAUAGCCUCAGCAUUGUCUG-GAUCUGUUUCGGGUCUGGGUCUGGGUACUGGUUAUGGUUCUGGUUCUGGUUU---------CGCCACUGUCA
((((.(((((((((((((((((((((((((...((...(((..-((((((...))))))..)).)...))...)))))))))))))))))))))))---------))....)))). ( -50.90)
>DroYak_CAF1 101488 94 - 1
GGCAUCGGAAUCGGAAUCGAAAUCAUAGCCUCAGCAUUGUCUG-GAUCUGUUUCGCG------------UUCUGGUUAUGGUUCUGGUUCUGGUUU---------CGCCACUGUCA
((((.((((((((((((((.((((((((((.(((......)))-((......))...------------....)))))))))).))))))))))))---------))....)))). ( -34.00)
>DroAna_CAF1 43520 98 - 1
AGAUUCGGAAUCGGAAUCAGAAUCGGGACUUUAGCAUUGUCUGGGAUAUGUUUCUGG------------UACGGA------UUCUGGUUCUGGUUACUCCACUACGGUUACUGUCA
.(((..((((((((((((((((((.(.(((..(((((.(((...))))))))...))------------).).))------)))))))))))))...)))((....))....))). ( -32.70)
>consensus
GGCAUCCGAAUCGGAAUCGGAAUCAUAGCCUCAGCAUUGUCUG_GAUCUGUUUCGGG____________UUCUGG______UUCUGGUUCUGGUUU_________GGCCACUGUCA
(((..........((((((((((((..((....)).........((......))..............................))))))))))))..........)))....... (-12.90 = -13.57 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:36 2006