Locus 5891

Sequence ID 2L_DroMel_CAF1
Location 16,646,290 – 16,646,388
Length 98
Max. P 0.650885
window9347

overview

Window 7

Location 16,646,290 – 16,646,388
Length 98
Sequences 6
Columns 104
Reading direction forward
Mean pairwise identity 80.81
Mean single sequence MFE -21.57
Consensus MFE -16.00
Energy contribution -16.28
Covariance contribution 0.28
Combinations/Pair 1.05
Mean z-score -1.34
Structure conservation index 0.74
SVM decision value 0.24
SVM RNA-class probability 0.650885
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16646290 98 + 22407834
ACACAACCAC---ACGAU--AACCU-CCCCACAAUCCAUUUGCCAACAUUACGCAUACGCCGCGUGGUGUCCAUAAAAAAUGCAACUCUGCAUUGUUUAGCCAG
..........---.....--.....-...............((..(((((((((.......)))))))))...((((.((((((....)))))).))))))... ( -17.80)
>DroPse_CAF1 114934 94 + 1
------CCGGAGAACGAAGGCGCCU-CCCCACGAUCCAUUAGCCGAUAUUACGCAUACGCCGCGUGGUGUCCAUAAAAAAUGCAACGCUGCAUUGUUUAGC---
------..((((..(....)...))-))................((((((((((.......))))))))))..((((.((((((....)))))).))))..--- ( -24.00)
>DroEre_CAF1 102421 98 + 1
ACACAAGCAC---ACGAU--AACCU-ACCCGCAAUCCAUUUGCCAACAUUACGCAUACGCCGCGUGGCGUCCAUAAAAAAUGCAACUCUGCAUUGCUUAGCCAG
....((((..---(((..--.....-....((((.....)))).....((((((.......)))))))))........((((((....))))))))))...... ( -18.60)
>DroYak_CAF1 100128 98 + 1
AAACAACCAC---ACGAU--AACCU-GUCCACAAUCCAUUUGCCAACAUUACGCAUACGCCGCGUGGUGUCCAUAAAAAAUGCAGCUCUGCAUAGUUUAGCCAG
..........---.....--...((-(..................(((((((((.......)))))))))...((((..(((((....)))))..))))..))) ( -18.00)
>DroAna_CAF1 42470 98 + 1
CCUCGGCCUG---ACACC--CACCA-ACCCGCAAUCCAUUAGCCGACAUUACGCAUACGCCGCGUGGUGUCCAUAAAAAAUGCAACUCUGCAUUGUUUAGCCAG
....(((..(---((...--.....-..................((((((((((.......)))))))))).......((((((....)))))))))..))).. ( -27.50)
>DroPer_CAF1 114930 95 + 1
------CCGGAGAACGAAGGCGCCCCCCCCACGAUCCAUUAGCCGAUAUUACGCAUACGCCGCGUGGUGUCCAUAAAAAAUGCAACGCUGCAUUGUUUAGC---
------..(((...((..((.......))..)).))).......((((((((((.......))))))))))..((((.((((((....)))))).))))..--- ( -23.50)
>consensus
ACACAACCAC___ACGAU__AACCU_CCCCACAAUCCAUUAGCCAACAUUACGCAUACGCCGCGUGGUGUCCAUAAAAAAUGCAACUCUGCAUUGUUUAGCCAG
.........................................((..(((((((((.......)))))))))...((((.((((((....)))))).))))))... (-16.00 = -16.28 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:35 2006