Locus 5890

Sequence ID 2L_DroMel_CAF1
Location 16,645,800 – 16,645,892
Length 92
Max. P 0.877826
window9346

overview

Window 6

Location 16,645,800 – 16,645,892
Length 92
Sequences 5
Columns 98
Reading direction reverse
Mean pairwise identity 87.20
Mean single sequence MFE -27.24
Consensus MFE -19.44
Energy contribution -19.48
Covariance contribution 0.04
Combinations/Pair 1.06
Mean z-score -2.37
Structure conservation index 0.71
SVM decision value 0.90
SVM RNA-class probability 0.877826
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16645800 92 - 22407834
ACUGAAAAACGUGGUGCAGGGGGGGGGGGU------UUCAGGGGCCGGAGAAGAUUGUCUGGCCAGGAAAUGCACACCGUUCCGAGUGCGAGAUAGAU
.............(..(.((((.((.(.((------(((...(((((((.(....).)))))))..))))).)...)).))))..)..)......... ( -32.20)
>DroSec_CAF1 100567 80 - 1
AGUGGAAAAU------------GGGGGGUU------UUCAGGGGCCGGAGAAGAUUGUCUGGCCAGGAAAUGCACACCGUUCCGAGAGCGAGAUAGAU
..((((..((------------((.(.(((------(((...(((((((.(....).))))))).)))))).)...)))))))).............. ( -25.80)
>DroSim_CAF1 102814 80 - 1
AGUGGAAAAU------------GGGGGGUU------UUCAGGGGCCGGAGAAGAUUGUCUGGCCAGGAAAUGCACACCGUUCCGAGAGCGAGAUAGAU
..((((..((------------((.(.(((------(((...(((((((.(....).))))))).)))))).)...)))))))).............. ( -25.80)
>DroEre_CAF1 101961 85 - 1
AGUGCGAAAU------------GGGGGGUUUUUGUUUUCAGGGGCUGGAGAAGAUUGUCUGGCCAGGAAAUGCACACCGUUCC-AGAGCGAGAUAGAU
..(((....(------------(((((((...(((((((...(((..((.(....).))..)))..)))).))).))).))))-)..)))........ ( -24.80)
>DroYak_CAF1 99641 81 - 1
AGUGCGAAAU------------GGGGGGUUU-----UUCAGGGGCCGGAGAAGAUUGUCUGGCCAGGAAAUGCACACCGUUCCGAGAGCGAGAUAGAU
.((.((.(((------------((...((.(-----(((...(((((((.(....).)))))))..)))).))...))))).))...))......... ( -27.60)
>consensus
AGUGCAAAAU____________GGGGGGUU______UUCAGGGGCCGGAGAAGAUUGUCUGGCCAGGAAAUGCACACCGUUCCGAGAGCGAGAUAGAU
......................(((((((.......(((...(((((((.(....).)))))))..)))......))).))))............... (-19.44 = -19.48 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:34 2006