Locus 5889

Sequence ID 2L_DroMel_CAF1
Location 16,644,322 – 16,644,417
Length 95
Max. P 0.852994
window9345

overview

Window 5

Location 16,644,322 – 16,644,417
Length 95
Sequences 5
Columns 105
Reading direction reverse
Mean pairwise identity 83.59
Mean single sequence MFE -16.45
Consensus MFE -10.46
Energy contribution -12.26
Covariance contribution 1.80
Combinations/Pair 1.00
Mean z-score -2.35
Structure conservation index 0.64
SVM decision value 0.80
SVM RNA-class probability 0.852994
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16644322 95 - 22407834
AUUCACAGUUUCCCUACGUAACCCUC---------UUUCCCCUUAAUUCGCAUC-CAUCCAAUUAACGAUGCGUGCGUAAUUAUCUCGAUAAUUAUGAUGAAACA
.......(((((..............---------..............((((.-((((........)))).))))((((((((....))))))))...))))). ( -17.30)
>DroPse_CAF1 113030 99 - 1
UCUCACAUUUUCCGCUCAUCUCCCCCCCCGCGCCGUCCACCAUUUAUUCGAC-----UCCAAUUAACGAUGCGUGCGCAAUUAUCUCGAUAAUUAUGGCGACUU-
............(((.(((.........(((((((((...............-----..........)))).))))).((((((....))))))))))))....- ( -15.01)
>DroSec_CAF1 99137 96 - 1
AUUCACAGUUUCCCUACGUAACCCUC---------UUUCCCCUUAAUUCGCAUCCCAUCCAAUUAACGAUGCGUGCGUAAUUAUCUCGAUAAUUAUGAUGAAACA
.......(((((..............---------.............((((((.............))))))..(((((((((....)))))))))..))))). ( -17.02)
>DroSim_CAF1 101375 96 - 1
AUUCACAGUUUCCCUACGUAACCCUC---------UUUCCCCUUAAUUCGCAUCCCAUCCAAUUAACGAUGCGUGCGUAAUUAUCUCGAUAAUUAUGAUGAAACA
.......(((((..............---------.............((((((.............))))))..(((((((((....)))))))))..))))). ( -17.02)
>DroEre_CAF1 100503 95 - 1
AUUCACAGUUUCCCUACAUAACCCUG---------UUUCCCCUUAAUUCGCAGC-CAUCCAAUUAACGAUGCGUGCGUAAUUAUCUCGAUAAUUAUGAUGAAACA
.......(((((....(((((...((---------((......(((((((((..-((((........))))..)))).)))))....)))).)))))..))))). ( -15.90)
>consensus
AUUCACAGUUUCCCUACGUAACCCUC_________UUUCCCCUUAAUUCGCAUC_CAUCCAAUUAACGAUGCGUGCGUAAUUAUCUCGAUAAUUAUGAUGAAACA
.......(((((....................................((((((.............))))))..(((((((((....)))))))))..))))). (-10.46 = -12.26 +   1.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:32 2006