Locus 5887

Sequence ID 2L_DroMel_CAF1
Location 16,640,481 – 16,640,576
Length 95
Max. P 0.661629
window9343

overview

Window 3

Location 16,640,481 – 16,640,576
Length 95
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 83.06
Mean single sequence MFE -28.90
Consensus MFE -20.06
Energy contribution -20.23
Covariance contribution 0.17
Combinations/Pair 1.36
Mean z-score -2.05
Structure conservation index 0.69
SVM decision value 0.27
SVM RNA-class probability 0.661629
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16640481 95 - 22407834
CUUGACUUUUACGGCUUUGGUUUGUAUCGUUGGAUUCUGUGGACGUU-GCCAGCUGGCCA--UUUUGCCAUUUCGGUGUAGCCAAAGCUGAAGCUAAA------
...........(((((((((((...((((((((....((....))..-.)))))((((..--....))))....)))..)))))))))))........------ ( -28.00)
>DroSec_CAF1 95264 95 - 1
CUUGACUUUUACGGCUUUGGUUUGUAUCGCUGGAUUCUGCGGACGUU-GCCAGUUGGCCA--UUUUGGCAUUUCUGUGUAGCCAAAGCUAAAUCCAAA------
............(((((((((..((.((((........))))))..(-(((((...(((.--....)))....))).)))))))))))).........------ ( -27.90)
>DroSim_CAF1 97445 95 - 1
CUUGACUUUUACGGCUUUGGUUUGUAUCGCUGGAUUCUGCGGACGUU-GCCAGUUGGCCA--UUUUGCCAUUUCUGUGUAGCCAAUGCUAAAUCCAAA------
.........((((((....).)))))....((((((..(((...(((-(((((.((((..--....))))...))).)))))...)))..))))))..------ ( -25.80)
>DroEre_CAF1 96361 99 - 1
CUUGACUUUUACGGCUUUGGUUUGUAUCGCUGGAUUCCGUGGACGUU-GCCAGCUGGCCA--UUUUGCCAUUUCUGU--AGCCAAAGCCAAAGCCAAAGCUAAA
............(((((((((((.....(((((.(..((....))..-))))))((((..--....)))).......--.....)))))))))))......... ( -32.10)
>DroYak_CAF1 94130 99 - 1
CUUGACUUUUACGGCUUUGGUUUGUGUCGUUGGAUUCCGUGGACGUU-GCCAGCUGGCCA--UUUUGCCAUUUCUGU--AGCCAAAGCCAAAGCUAAAGCCAAU
.(((.((((...(((((((((((..(((..(((...)))..)))(((-((.((.((((..--....))))...))))--)))..))))))))))))))).))). ( -29.70)
>DroAna_CAF1 36199 90 - 1
CUUGACUUUUACGGCUUUGCUUUUGGUC------UUUUGUGGAUUUUGGCCAGUUGGCCGCUUUUUGCCAUUUCUGU--AGCCAAAGUCAGAGUCAGA------
.((((((((...((((........))))------.......((((((((((((.((((........))))...))).--.))))))))))))))))).------ ( -29.90)
>consensus
CUUGACUUUUACGGCUUUGGUUUGUAUCGCUGGAUUCUGUGGACGUU_GCCAGCUGGCCA__UUUUGCCAUUUCUGU__AGCCAAAGCCAAAGCCAAA______
.(((.((((...((((((((((......(((((....((....))....)))))((((........)))).........)))))))))))))).)))....... (-20.06 = -20.23 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:30 2006