Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 16,635,827 – 16,635,939 |
Length | 112 |
Max. P | 0.956861 |
Location | 16,635,827 – 16,635,939 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 92.05 |
Mean single sequence MFE | -28.84 |
Consensus MFE | -23.64 |
Energy contribution | -23.80 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.11 |
Mean z-score | -1.83 |
Structure conservation index | 0.82 |
SVM decision value | 1.19 |
SVM RNA-class probability | 0.928770 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16635827 112 + 22407834 UCGCUGAAUGAGAUCAGACGGUGCAUUUUAUAGGAAAAGUUGAGCAGAUAAAAGGAAUUCUUUUGUUGGAAGUGCU---GGCAAAAUUUGAAAGCUCAACUUGUUAUUGCAUCUU ..(((((......)))).)((((((....((((...(((((((((.((..........))((((((..(.....).---.)))))).......))))))))).)))))))))).. ( -29.00) >DroSec_CAF1 90603 112 + 1 UCGCUGAAUGAGAUCAGACGGUGCGUUUUAUAGGAAAAGUUGAGCAGAUAAAAGGAAUUCUUUUGUUGGAAGUGCU---GGCGAAAUUUGAAAGCUCAACUUGUUAUUGCAUCUC ..(((((......)))).)((((((....((((...(((((((((.....(((((....)))))((..(.....).---.))...........))))))))).)))))))))).. ( -28.10) >DroSim_CAF1 92800 112 + 1 UCGCUGAAUGAGAUCAGACGGUGCGUUUUAUAGGAAAAGUUGAGCAGAUAAAAGGAAUUCUUUUGUUGGAAGUGCU---GGCGAAAUUUGAAAGCUCAACUUGUUAUUGCAUCUC ..(((((......)))).)((((((....((((...(((((((((.....(((((....)))))((..(.....).---.))...........))))))))).)))))))))).. ( -28.10) >DroEre_CAF1 91783 115 + 1 UCGCCGAAUGAGAUCAGACAUUGAGUUUUAUGGCAAAAGUUGAGCAGAUAAAAGGAAUUCUUUUGUUGGCAGUGCUAUUUGCGAAAUUUGAAAGCUCAACUUAUUAUUGCAUCUA ..(((..((((((((((...)))).)))))))))..(((((((((.((((((((.....)))))))).((((......))))...........)))))))))............. ( -28.90) >DroYak_CAF1 89656 112 + 1 UCGCUGAAUGAGAUCAGACAGUGAGUUUUAUAGGAAAAGUUGAGCUGAUAAAAGGAAUUCCUUUGUUGGAAGUGCU---GGCGAAAUUUGAAAGUUCAACUUAUUAUGGUAUCUA ((((((..((....))..))))))...((((((...((((((((((..((((.((....))(((((..(.....).---.))))).))))..)))))))))).))))))...... ( -30.10) >consensus UCGCUGAAUGAGAUCAGACGGUGCGUUUUAUAGGAAAAGUUGAGCAGAUAAAAGGAAUUCUUUUGUUGGAAGUGCU___GGCGAAAUUUGAAAGCUCAACUUGUUAUUGCAUCUA .(((((..((....))..))))).............(((((((((.((((((((.....)))))))).....(((.....)))..........)))))))))............. (-23.64 = -23.80 + 0.16)
Location | 16,635,827 – 16,635,939 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 92.05 |
Mean single sequence MFE | -18.26 |
Consensus MFE | -18.64 |
Energy contribution | -18.28 |
Covariance contribution | -0.36 |
Combinations/Pair | 1.14 |
Mean z-score | -1.33 |
Structure conservation index | 1.02 |
SVM decision value | 1.47 |
SVM RNA-class probability | 0.956861 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16635827 112 - 22407834 AAGAUGCAAUAACAAGUUGAGCUUUCAAAUUUUGCC---AGCACUUCCAACAAAAGAAUUCCUUUUAUCUGCUCAACUUUUCCUAUAAAAUGCACCGUCUGAUCUCAUUCAGCGA ....(((((((..(((((((((..........((..---..))........(((((.....)))))....)))))))))....)))....)))).((.((((......)))))). ( -20.00) >DroSec_CAF1 90603 112 - 1 GAGAUGCAAUAACAAGUUGAGCUUUCAAAUUUCGCC---AGCACUUCCAACAAAAGAAUUCCUUUUAUCUGCUCAACUUUUCCUAUAAAACGCACCGUCUGAUCUCAUUCAGCGA .............(((((((((...........(..---..).........(((((.....)))))....)))))))))................((.((((......)))))). ( -18.30) >DroSim_CAF1 92800 112 - 1 GAGAUGCAAUAACAAGUUGAGCUUUCAAAUUUCGCC---AGCACUUCCAACAAAAGAAUUCCUUUUAUCUGCUCAACUUUUCCUAUAAAACGCACCGUCUGAUCUCAUUCAGCGA .............(((((((((...........(..---..).........(((((.....)))))....)))))))))................((.((((......)))))). ( -18.30) >DroEre_CAF1 91783 115 - 1 UAGAUGCAAUAAUAAGUUGAGCUUUCAAAUUUCGCAAAUAGCACUGCCAACAAAAGAAUUCCUUUUAUCUGCUCAACUUUUGCCAUAAAACUCAAUGUCUGAUCUCAUUCGGCGA .....((((....(((((((((...........(((........)))....(((((.....)))))....)))))))))))))............((.((((......)))))). ( -21.20) >DroYak_CAF1 89656 112 - 1 UAGAUACCAUAAUAAGUUGAACUUUCAAAUUUCGCC---AGCACUUCCAACAAAGGAAUUCCUUUUAUCAGCUCAACUUUUCCUAUAAAACUCACUGUCUGAUCUCAUUCAGCGA .............(((((((.((..........(..---..).........(((((....)))))....)).)))))))............((.(((..((....))..))).)) ( -13.50) >consensus GAGAUGCAAUAACAAGUUGAGCUUUCAAAUUUCGCC___AGCACUUCCAACAAAAGAAUUCCUUUUAUCUGCUCAACUUUUCCUAUAAAACGCACCGUCUGAUCUCAUUCAGCGA .............(((((((((...........((.....)).........(((((.....)))))....)))))))))................((.((((......)))))). (-18.64 = -18.28 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:29 2006