Locus 5883

Sequence ID 2L_DroMel_CAF1
Location 16,632,506 – 16,632,611
Length 105
Max. P 0.720219
window9333

overview

Window 3

Location 16,632,506 – 16,632,611
Length 105
Sequences 5
Columns 108
Reading direction forward
Mean pairwise identity 88.67
Mean single sequence MFE -23.00
Consensus MFE -16.10
Energy contribution -18.06
Covariance contribution 1.96
Combinations/Pair 1.04
Mean z-score -2.19
Structure conservation index 0.70
SVM decision value 0.40
SVM RNA-class probability 0.720219
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16632506 105 + 22407834
CCUUUGAUGAGUCACAAAAUGCCGCUGCAUGAGCUCAAACAAAAGCAA---UGCAAAAAAAUAAGGGGGAGAAAUCCCCUUCACAUUUCUGCAUUCACCCGCACUUUU
..((((.(((((......((((....))))..)))))..)))).((((---((((.(((....(((((((....)))))))....))).)))))).....))...... ( -26.70)
>DroSec_CAF1 87369 103 + 1
CCUUUGAUGAGUCACAAAAUGCCGCUGCAUGAGCUCAAACAAAAGCAA---UGCAAAAAA--GAGGGGGAGAAAUCCCCUUCACAUUUCUGCAUUCACCCGCACUUUU
..((((.(((((......((((....))))..)))))..)))).((((---((((.(((.--((((((((....))))))))...))).)))))).....))...... ( -29.40)
>DroSim_CAF1 89559 103 + 1
CCUUUGAUGAGUCACAAAAUGCCGCUGCAUGAGCUCAAACAAAAGCAA---UGCAAAAAA--GAGGGGGAGAAAGCCCCUUCACAUUUCUGCAUUCACCCGCACUUUU
..((((.(((((......((((....))))..)))))..)))).((((---((((.(((.--(((((((......)))))))...))).)))))).....))...... ( -25.40)
>DroEre_CAF1 88676 90 + 1
CCUUUGAUGAGUAACAAAAUGCCGCCGCAUGAGCUCAAACAAA----------------A--AAACGGGAGAAAUCCCCUUCACAUUACUGCAUUCACCCGCACUUUU
..((((.(((((......((((....))))..)))))..))))----------------.--....((((....))))...........(((........)))..... ( -16.60)
>DroYak_CAF1 86559 106 + 1
CCUUUGAUGAGUCACAAAAUGCCGCUGCAUGAGCUCAAACAAAAGCAAAAAUCAAACAAA--AAACGGGAGAAAUCCCCUUCACAUUUCUGCAUACACCCGCACUUUU
.......(((((......((((....))))..)))))...(((((...............--....((((....))))...........(((........)))))))) ( -16.90)
>consensus
CCUUUGAUGAGUCACAAAAUGCCGCUGCAUGAGCUCAAACAAAAGCAA___UGCAAAAAA__AAGGGGGAGAAAUCCCCUUCACAUUUCUGCAUUCACCCGCACUUUU
..((((.(((((......((((....))))..)))))..))))....................(((((((....)))))))........(((........)))..... (-16.10 = -18.06 +   1.96)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:21 2006