Locus 5882

Sequence ID 2L_DroMel_CAF1
Location 16,630,932 – 16,631,024
Length 92
Max. P 0.767368
window9332

overview

Window 2

Location 16,630,932 – 16,631,024
Length 92
Sequences 6
Columns 92
Reading direction forward
Mean pairwise identity 82.95
Mean single sequence MFE -20.38
Consensus MFE -14.58
Energy contribution -14.47
Covariance contribution -0.11
Combinations/Pair 1.07
Mean z-score -2.29
Structure conservation index 0.72
SVM decision value 0.52
SVM RNA-class probability 0.767368
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16630932 92 + 22407834
ACCCAUAUCCUGCAGUGGCCACGCCCACUCCACACUUCCCGCGCACAUCCUUUCGCCCCCCCUUUGGCCUUUUUAUGGCCACGUGCGAAAAU
..........((((((((((((((................)))...........(((........))).......))))))).))))..... ( -21.29)
>DroPse_CAF1 97829 85 + 1
CACCAUAUCCUGCAGUGGCCACACCUCCUCCGC-CAGCCCGC--AGACCAG----ACCCCGGUCUGCUCUUUUUAUGGCCACGUGCGAAAAU
..........(((((((((((..........(.-...)..((--(((((..----.....)))))))........))))))).))))..... ( -28.20)
>DroSec_CAF1 85825 91 + 1
AGCCAUAUCCUGCAGUGGCCACGCCCACUCCACACUGCCCGCCCACAUCCUUUU-CCCCCCCUUUGGCCUUUUUAUGGCCACGUGCGAAAAU
.(((.......((((((...............))))))................-.........(((((.......))))).).))...... ( -18.76)
>DroSim_CAF1 88003 91 + 1
AGCCAUAUCCUGCAGUGGCCACGCCCACUCCACACUGCCCGCCCACAUCCUUUU-CCCCCCCUUUGGCCUUUUUAUGGCCACGUGCGAAAAU
.(((.......((((((...............))))))................-.........(((((.......))))).).))...... ( -18.76)
>DroEre_CAF1 87146 73 + 1
ACCCAUAUCCUGCAGUGGCCACGCCCACU--------------CACAUCCUU----CCCCCU-UUGGCCUUUUUAUGGCCACGUGCGAAAAU
..........(((((((((((.(((....--------------.........----......-..))).......))))))).))))..... ( -16.20)
>DroYak_CAF1 84979 88 + 1
ACCCGUAUCCUGCAGUGGCCACGCCCACUCCACACUUCCCGCGCACAUCCUU----CCCCCUUUUGGCCUUUUUAUGGCCACGUGCGAAAAU
..........((.(((((......))))).)).........(((((......----........(((((.......))))).)))))..... ( -19.06)
>consensus
ACCCAUAUCCUGCAGUGGCCACGCCCACUCCACACUGCCCGC_CACAUCCUU___CCCCCCCUUUGGCCUUUUUAUGGCCACGUGCGAAAAU
..........(((((((((((.(((........................................))).......))))))).))))..... (-14.58 = -14.47 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:20 2006