| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 16,627,267 – 16,627,367 |
| Length | 100 |
| Max. P | 0.773989 |
| Location | 16,627,267 – 16,627,367 |
|---|---|
| Length | 100 |
| Sequences | 4 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 74.87 |
| Mean single sequence MFE | -18.57 |
| Consensus MFE | -13.19 |
| Energy contribution | -13.50 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.773989 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16627267 100 - 22407834 AGCUUUAUAUGUGGCUGGUUAAAGGAGCUUUUAUUAGAUUAGCUUUAUCGGCCAAACAACUAUUUUUAAUCAACUAUUAAAAGGGUAAAAUUCUAGGAUU ...........((((((((....((((((...........))))))))))))))....(((.((((((((.....))))))))))).............. ( -17.20) >DroSec_CAF1 82187 77 - 1 AGCUUUAUAUGUGGCUGGUUAAAGGAGCUUUUAUUAGAUUAGAUUUAUCGGCGAAUCACUUAUUUUUAAUCAGCUAU----------------------- ..........(((((((((((((((..((......))....(((((......))))).....)))))))))))))))----------------------- ( -17.10) >DroSim_CAF1 84068 77 - 1 GGCUUUAUAUGUGGCUGGUUAAAGAUGCUUUUAUUAGAUUAGAUUUAUCGGCGAAUCACUUAUUUUUAAUCAGCUAU----------------------- ..........(((((((((((((((((((......))....(((((......)))))...)))))))))))))))))----------------------- ( -19.60) >DroYak_CAF1 81389 96 - 1 GGCUUUAUAUGUGGCUGGUUAACGGGGCUUUUAUUGGAUUAGAUUUAUCGGUGAACCACUUACUUUUAACCAACUAUAAAGAGAC---CAUUAUA-UAUU ((((((...(((((.(((((((.((...........(((.......)))((....)).....)).))))))).))))).)))).)---)......-.... ( -20.40) >consensus AGCUUUAUAUGUGGCUGGUUAAAGGAGCUUUUAUUAGAUUAGAUUUAUCGGCGAAUCACUUAUUUUUAAUCAACUAU_______________________ ..........(((((((((((((((...........(((.......)))((....)).....)))))))))))))))....................... (-13.19 = -13.50 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:19 2006