Locus 5880

Sequence ID 2L_DroMel_CAF1
Location 16,623,345 – 16,623,447
Length 102
Max. P 0.754055
window9330

overview

Window 0

Location 16,623,345 – 16,623,447
Length 102
Sequences 5
Columns 106
Reading direction reverse
Mean pairwise identity 79.94
Mean single sequence MFE -30.54
Consensus MFE -19.38
Energy contribution -21.10
Covariance contribution 1.72
Combinations/Pair 1.04
Mean z-score -1.86
Structure conservation index 0.63
SVM decision value 0.48
SVM RNA-class probability 0.754055
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16623345 102 - 22407834
UUGGAGACUUUUGACAGCAUCGUCGUCGCUGUCAUUAAGUCCGUCCGUCGCGAAGGAAACUCCCCUUGAAGACA-AAUGCGAUGGAUUUGGAUUCCC---CCAAUG
((((.(((((.(((((((.........)))))))..))))).((((((((((.((....))....(((....))-).))))))))))..........---)))).. ( -34.60)
>DroSec_CAF1 78286 101 - 1
UUGGAGACUUUUGACAGCCUCGUCGUCGCUGUCAUUAAGUCCGUCCGUCGCGAAGGAAACUCCCCUUGAAGACA-AAUGCGAUGGAUUUGGAU-CCC---CCAAUG
((((.(((((.(((((((.........)))))))..))))).((((((((((.((....))....(((....))-).))))))))))......-...---)))).. ( -34.00)
>DroSim_CAF1 77466 101 - 1
UUGGAGACUUUUGACAGCCUCGUCGUCGCUGUCAUUAAGUCCGUCCGUCGCGAAGGAAACUCCCCUUGAAGACA-AAUGCGAUGGAUUUGGAU-CCC---CCAAUG
((((.(((((.(((((((.........)))))))..))))).((((((((((.((....))....(((....))-).))))))))))......-...---)))).. ( -34.00)
>DroEre_CAF1 79416 89 - 1
UUGCAGACUGUUGACAGCAUCGUCGUCGCUGUCAUUAAGUCC----GUGGAGAAGGAAACUCCCCUUAAGCAAAAAAUUAG------UUGACU-CCAAUG------
((((.((((..(((((((.........)))))))...)))).----..((.(.((....)).)))....)))).......(------(((...-.)))).------ ( -24.80)
>DroYak_CAF1 77313 92 - 1
UCGCCGUCUUUUGACAGCAUCGUCGUCGCUGUCAUUAAGUCC----GUCGAGAAGGAAACUCCCCUUG---AAAAAAUUAG------UUGGAU-CCAAUGGCAAUG
..((((.(((.(((((((.........)))))))..))).).----.(((((.((....))...))))---)........(------(((...-.))))))).... ( -25.30)
>consensus
UUGGAGACUUUUGACAGCAUCGUCGUCGCUGUCAUUAAGUCCGUCCGUCGCGAAGGAAACUCCCCUUGAAGACA_AAUGCGAUGGAUUUGGAU_CCC___CCAAUG
.....(((((.(((((((.........)))))))..))))).((((((((((((((.......))))..........))))))))))................... (-19.38 = -21.10 +   1.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:18 2006