| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 1,796,246 – 1,796,343 |
| Length | 97 |
| Max. P | 0.998457 |
| Location | 1,796,246 – 1,796,343 |
|---|---|
| Length | 97 |
| Sequences | 3 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 73.19 |
| Mean single sequence MFE | -30.70 |
| Consensus MFE | -20.06 |
| Energy contribution | -21.30 |
| Covariance contribution | 1.24 |
| Combinations/Pair | 1.27 |
| Mean z-score | -2.21 |
| Structure conservation index | 0.65 |
| SVM decision value | 3.11 |
| SVM RNA-class probability | 0.998457 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1796246 97 - 22407834 AAAUAUUUUCG-------------ACCGAUUUAGCGCUUCAUUUGCCUGGGUGGGCGUGACCAGGAGGGGCGUGGCAGUUUGUUAUUCUUUGAUAUGCUAAAUUGGUGCA ...........-------------((((((((((((((((.....(((((..........))))).)))))(((((.....)))))..........)))))))))))... ( -30.40) >DroSec_CAF1 3544 97 - 1 AAAUAUUUUCG-------------ACCGAUUUUGCACUUCAUUUGCCUGGAAGGGCGUGUCCGGGAGGGACGUGGCAGUUUGUUUUUCUUUGAUGUGCUAAAUUGGUGCA ...........-------------((((((((.((((.......((((....))))..(((..(((((((((........)))))))))..))))))).))))))))... ( -31.00) >DroPer_CAF1 10155 105 - 1 AAAUAUUUUCCCACUUCGUUUUGCCCCGUUUUUGCACUUCAUUUGUGUUUGAAGGGG-----AAGAGGGGAGUGGCUGUUUGCUUUUCUUUGAUAUGCGAAAUUUAUGCA ..........(((((((.((((.((((.(((..((((.......))))..)))))))-----.)))).)))))))...(((((...((...))...)))))......... ( -30.70) >consensus AAAUAUUUUCG_____________ACCGAUUUUGCACUUCAUUUGCCUGGGAGGGCGUG_CCAGGAGGGGCGUGGCAGUUUGUUUUUCUUUGAUAUGCUAAAUUGGUGCA ........................((((((((((((..(((..(((((....))))).....((((((((((........)))))))))))))..))))))))))))... (-20.06 = -21.30 + 1.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:24 2006