Locus 5879

Sequence ID 2L_DroMel_CAF1
Location 16,623,031 – 16,623,121
Length 90
Max. P 0.639924
window9329

overview

Window 9

Location 16,623,031 – 16,623,121
Length 90
Sequences 6
Columns 93
Reading direction forward
Mean pairwise identity 81.17
Mean single sequence MFE -16.20
Consensus MFE -11.27
Energy contribution -11.05
Covariance contribution -0.22
Combinations/Pair 1.12
Mean z-score -1.48
Structure conservation index 0.70
SVM decision value 0.22
SVM RNA-class probability 0.639924
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16623031 90 + 22407834
---ACCCCUUUCGCCUGCCUCAAAAUCCACAUAAACUUGUCCAUUUUUACGAGCCGCUUUGGCGGCACAGAUUUAUUGGCUUCCUCGCUUCUG
---.........((..(((...(((((.(((......)))............(((((....)))))...)))))...)))......))..... ( -18.20)
>DroPse_CAF1 88548 86 + 1
-----CCCCUCCACCAUACCC-UUUCCAGCAUAAAGUUGUCCAUUUUUACGAGCCGCUUUGGCGGCACAGAUUUAUUGGCUUCCUCGCUU-UA
-----........(((.....-....((((.....)))).............(((((....)))))..........)))...........-.. ( -14.60)
>DroEre_CAF1 79107 89 + 1
---ACCCCUUUCGCCACCCUU-AAACUCACAUAAACUUGUCCAUUUUUACGAGCCGCUUUGGCGGCACAGAUUUAUUGGCUUCCUCGUUUCUG
---.........((((....(-(((.(((((......)))............(((((....)))))...)))))).))))............. ( -16.90)
>DroYak_CAF1 77009 89 + 1
---ACCCCUUUUGCCUCCCUU-AAAUCCACAUAAACUUGUCCAUUUUUACGAGCCGCUUUGGCGGCACAGAUUUAUUGGCUUCCUCGCUUUUG
---.........(((.....(-(((((.(((......)))............(((((....)))))...))))))..)))............. ( -18.40)
>DroAna_CAF1 19936 86 + 1
---ACCACU--CUCCCCCCUU-CAUACAGCAUAAACUUGUCCACUUUUACGAGCCGCUUUGGCGGCACAGAUUUAUUGGCUUCCUCGUU-UUG
---......--..........-.....((((((((.((((...(......).(((((....))))))))).)))))..)))........-... ( -13.00)
>DroPer_CAF1 88299 89 + 1
CCCUCCCCCUUCACCAUACCU-UUACCAGCAUAAAGUUUUCCAUUUU--CGAGCCGCUUUGGCGGCACAGAUUUUAUGGCUUCCUCGCUU-UA
.....................-.......((((((((((((......--.))(((((....)))))..))))))))))((......))..-.. ( -16.10)
>consensus
___ACCCCUUUCGCCACCCUU_AAACCAACAUAAACUUGUCCAUUUUUACGAGCCGCUUUGGCGGCACAGAUUUAUUGGCUUCCUCGCUU_UG
....................................................(((((....)))))...........(((......))).... (-11.27 = -11.05 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:17 2006