Locus 5877

Sequence ID 2L_DroMel_CAF1
Location 16,618,252 – 16,618,354
Length 102
Max. P 0.611121
window9326

overview

Window 6

Location 16,618,252 – 16,618,354
Length 102
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 78.82
Mean single sequence MFE -47.05
Consensus MFE -26.59
Energy contribution -27.60
Covariance contribution 1.01
Combinations/Pair 1.45
Mean z-score -1.74
Structure conservation index 0.57
SVM decision value 0.16
SVM RNA-class probability 0.611121
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16618252 102 - 22407834
GCCGCCAUCAAGGCCAGCUGCUGUUGUGGGUGGUGCAGCGCGCACACGGGCGGCACAAUCUGGGCGCCCUGCGGCGGAGUUGCGGUUUGCUGCAGCAAAGGC
.(((((......((((.(..(....)..).))))((((.((((...((((........)))).)))).))))))))).(((((((....)))))))...... ( -49.00)
>DroVir_CAF1 37984 102 - 1
GCCGCCAGCAAAGCCAGCUGCUGCUGCGGAUGGUGCAGCGCACAGACUGGCGGCACUAUCUGGGCACCCUGAGGCGGUGUCGCCGUCUGCUGCAGCAGUGGC
((.....))...((((.(((((((((((.....))))))((((((((.(((((((((..((.((....)).))..)))))))))))))).)))))))))))) ( -55.40)
>DroGri_CAF1 39863 102 - 1
GCCGCUAACAGCGUUAACUGCUGCUGCGGAUGAUGUAGCGCACACACGGGUGGCACAAUUUGGGCACCCUGUGGCGGUGUCGCUGUUUGCUGCAACAGUGGC
((.((.(((((((...(((((.((((((.....))))))...((((.(((((.(........).))))))))))))))..))))))).)).))......... ( -47.30)
>DroWil_CAF1 163946 102 - 1
GCCGCCAAUAAGGUCAAUUGCUGUUGCGGAUGAUGCAAAGCACAGACAGGUGGCACAAUUUGAGCGCCCUGCGGUGGCGUUGCCGUUUGCUGCAGCAAAGGC
((((((.....)))...(((((((.(((((((..((((.((((.(.((((..((.(.....).))..))))).)).)).))))))))))).))))))).))) ( -39.40)
>DroAna_CAF1 15052 102 - 1
GCGGCCAUCAGGGCGAGCUGCUGCUGGGGAUGGUGCAGGGCGCAGACGGGCGGAACAAUCUGGGCGCCCUGGGGCGGUGUUGCCGUUUGUUGCAGCAACGGA
((.(((.(((((((...((((.(((......))))))).((.((((..(......)..)))).)))))))))))).))(((((.((.....)).)))))... ( -46.00)
>DroPer_CAF1 83758 102 - 1
GCGGCCAUCAGCCCCAGUUGCUGCUGUGGGUGGUGCAGCGCACAGACGGGCGGCACAAUCUGUGACCCCUGCGACGGCGUUGCGGUCUGCUGCUACAAUGAC
((((((((((.(((((((....)))).)))))))(((((((...(.((((.(((((.....))).)))))))....))))))))).))))............ ( -45.20)
>consensus
GCCGCCAUCAAGGCCAGCUGCUGCUGCGGAUGGUGCAGCGCACAGACGGGCGGCACAAUCUGGGCGCCCUGCGGCGGUGUUGCCGUUUGCUGCAGCAAUGGC
................((((((((.(((((((..(((((((.....((((..((.(.....).))..)))).....)))))))))))))).))))))))... (-26.59 = -27.60 +   1.01)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:15 2006