Locus 5876

Sequence ID 2L_DroMel_CAF1
Location 16,615,120 – 16,615,217
Length 97
Max. P 0.607435
window9325

overview

Window 5

Location 16,615,120 – 16,615,217
Length 97
Sequences 4
Columns 97
Reading direction forward
Mean pairwise identity 92.27
Mean single sequence MFE -21.45
Consensus MFE -20.79
Energy contribution -21.35
Covariance contribution 0.56
Combinations/Pair 1.07
Mean z-score -1.29
Structure conservation index 0.97
SVM decision value 0.15
SVM RNA-class probability 0.607435
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16615120 97 + 22407834
AUCUUCACAUGCGAAGAAUAAUUUCAUGUUAAAUGUGAAUUUAACCAUCACCAAUUGAAUUAACAUUUGACAUUCUUUGUGCCCGUGUAGGUGGGUG
..........(((((((........(((((((((((.(((((((..........))))))).))))))))))))))))))(((((......))))). ( -24.10)
>DroSec_CAF1 70266 97 + 1
AUUCUAACAUGCGAAGAAUAAUUUCAUGUUAGAUGUGAAUUUAACCACCACCAAUUGAAUUAAAAUUUGACAUUCUUUGUGCCCGUGUAGGUGGGUG
..........(((((((........(((((((((...(((((((..........)))))))...))))))))))))))))(((((......))))). ( -20.40)
>DroSim_CAF1 69511 97 + 1
AUCUUUACAUGCGAAGAAUAAUUUCAUGUUAGAUGUGAAUUUAACCAUCGCCAAUUGAAUUAACAUUUGACAUUCUUUGUGCCCGUGUAGGUGGGUG
..........(((((((........(((((((((((.(((((((..........))))))).))))))))))))))))))(((((......))))). ( -24.20)
>DroYak_CAF1 69178 97 + 1
AUCUUCACAAGCGGAGAAUAAUUUUAUUCCAAAUGUGAAUUUAACCAUCACCAAUUGAAUUAACAUUUAACAUUCUUUGUGCCCGUGUAGGUGGGUG
...(((((..((((.(((((....))))).((((((.(((((((..........))))))).))))))..............))))....))))).. ( -17.10)
>consensus
AUCUUCACAUGCGAAGAAUAAUUUCAUGUUAAAUGUGAAUUUAACCAUCACCAAUUGAAUUAACAUUUGACAUUCUUUGUGCCCGUGUAGGUGGGUG
..........(((((((........(((((((((((.(((((((..........))))))).))))))))))))))))))(((((......))))). (-20.79 = -21.35 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:14 2006