Locus 5875

Sequence ID 2L_DroMel_CAF1
Location 16,613,004 – 16,613,101
Length 97
Max. P 0.916545
window9324

overview

Window 4

Location 16,613,004 – 16,613,101
Length 97
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 88.69
Mean single sequence MFE -26.27
Consensus MFE -22.77
Energy contribution -22.30
Covariance contribution -0.47
Combinations/Pair 1.24
Mean z-score -2.12
Structure conservation index 0.87
SVM decision value 1.11
SVM RNA-class probability 0.916545
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16613004 97 - 22407834
----UCUG-CAGUUGCAUAAGGCGGCGUAAUAAAAACAAUGCAACUACAAUUUGUGGCAGCGUUGGCGGCUAAUUACUGCUACUAUUGCAUAAGGAAAGCUU
----...(-(.(((((.....)))))((((((....((((((..((((.....))))..))))))((((.......))))...)))))).........)).. ( -26.70)
>DroSec_CAF1 68096 94 - 1
----UCUG-CUGUUGCAUAAGGCGGCGUAAUAAAAACAAUGCAACUACAAUUUGUGGCAGCGUUGGCGGCUAAUUACUGC---UAUUGCAUAAGGAAAACUU
----((((-(((((......))))))((((((....((((((..((((.....))))..))))))((((.......))))---))))))....)))...... ( -27.00)
>DroSim_CAF1 67326 94 - 1
----UCUG-CAGUUGCAUAAGGCGGCGUAAUAAAAACAACGCAACUACAAUUUGUGGCAGCGUUGGCGGCUAAUUACUGC---UAUUGCAUAAGGAAAACUU
----(((.-..(((((.....)))))((((((....((((((..((((.....))))..))))))((((.......))))---))))))....)))...... ( -27.30)
>DroEre_CAF1 69176 94 - 1
----ACUU-CAGUUGCAUAAGGCGGCGUAAUAAAAACAAUGCAACUACAAUUUGUGGCAGCAUUGGCGGCUAAUUACUGC---UAUUGCAUAAAGACAACUA
----....-..(((((.....)))))((((((....((((((..((((.....))))..))))))((((.......))))---))))))............. ( -25.20)
>DroYak_CAF1 66853 94 - 1
----UCUU-CAGUUGCAUAAGGCGGAGUAAUAAAAACAAUGCAACUACAAUUUGUGGCAGCGUUGGCGGCUAAUUACUGC---UAUUGCACAAAGUCAACUA
----....-...........(((.(.((((((....((((((..((((.....))))..))))))((((.......))))---)))))).)...)))..... ( -22.30)
>DroAna_CAF1 9802 99 - 1
UGCCACUUCUGGUUGCAUAAGGCAGUGUAAUAAAAACAAUGCAACUACAAUUUGUGGCAGCGUUGGCGGCUAAUUACCGU---GAUUGCAUAAAGGCAGCAA
((((.........(((.....)))(((((((.....((((((..((((.....))))..))))))((((.......))))---.)))))))...)))).... ( -29.10)
>consensus
____UCUG_CAGUUGCAUAAGGCGGCGUAAUAAAAACAAUGCAACUACAAUUUGUGGCAGCGUUGGCGGCUAAUUACUGC___UAUUGCAUAAAGAAAACUA
...........(((((.....)))))((((((....((((((..((((.....))))..))))))((((.......))))...))))))............. (-22.77 = -22.30 +  -0.47)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:13 2006