Locus 5874

Sequence ID 2L_DroMel_CAF1
Location 16,612,170 – 16,612,277
Length 107
Max. P 0.583437
window9323

overview

Window 3

Location 16,612,170 – 16,612,277
Length 107
Sequences 5
Columns 115
Reading direction reverse
Mean pairwise identity 72.00
Mean single sequence MFE -19.48
Consensus MFE -8.34
Energy contribution -8.70
Covariance contribution 0.36
Combinations/Pair 1.18
Mean z-score -1.72
Structure conservation index 0.43
SVM decision value 0.10
SVM RNA-class probability 0.583437
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16612170 107 - 22407834
ACUAAACAAAAUUCUGAAAAUAACGCCGAAAAGAUACGCAUUUGUAAUCUAAAUGCUGUUUUGUAUAUGAA-----GUAGAAUCAGGCGUUGCAGUUUAGCCAAACAA---AAAU
.((((((.......(....)(((((((...((((((.(((((((.....))))))))))))).....(((.-----......))))))))))..))))))........---.... ( -21.50)
>DroSec_CAF1 67269 99 - 1
ACUAAACAAAAUUCCGAAAAUAAUGCAGAAAAGAUACGCAUUUGUAACCUAAAUGCUGUUCUGUAUAUGAA-----GUAGAAUU--------UAGUUUAGAUAACUAA---AAAU
.((((((.((((((........((((((((.......(((((((.....)))))))..)))))))).....-----...)))))--------).))))))........---.... ( -22.09)
>DroSim_CAF1 66489 107 - 1
ACUAAACAAAAUUCCGAAAAUAAUGCAGAAGAGAUAUGCAUUUGUAAACUAAAUGCUGUUCUGUAUAUGAA-----AUAGAAUCAGGCGUUGCAGUUUAGAUAACUAA---AAAU
.((((((..(((.((.......((((((((.(.....(((((((.....)))))))).)))))))).(((.-----......))))).)))...))))))........---.... ( -21.00)
>DroEre_CAF1 68331 106 - 1
UA----CAAUUUUCUGAAAAUAAUGCAG-----ACACGUAUUUUUAAUCUAAAUGCUGUUUUGUAUACUAUGUUUUGUAGUAUUGGUUAUUACCAUUUAGAUAAGCCACAAGGAA
..----......((((((.....(((((-----(((.((((((.......)))))))).))))))((((((.....)))))).((((....))))))))))....((....)).. ( -19.00)
>DroYak_CAF1 66025 107 - 1
GC-AACCUAAAUUCUGAAAUUAAUGCAGAAGCGAUACGUAUUUUCAAUC-AAAUGCUGUUCUGUAUAUGAA-----GUAGAACUCGGAGUCACAAUUUAAAUAACCAA-ACAAAG
..-..((....(((((......((((((((.((....((((((......-)))))))))))))))).....-----.)))))...)).....................-...... ( -13.80)
>consensus
ACUAAACAAAAUUCUGAAAAUAAUGCAGAAAAGAUACGCAUUUGUAAUCUAAAUGCUGUUCUGUAUAUGAA_____GUAGAAUUAGGCGUUACAGUUUAGAUAACCAA___AAAU
......................(((((((....(((.(((((((.....)))))))))))))))))................................................. ( -8.34 =  -8.70 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:12 2006