| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 16,609,133 – 16,609,240 |
| Length | 107 |
| Max. P | 0.622614 |
| Location | 16,609,133 – 16,609,240 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 83.05 |
| Mean single sequence MFE | -26.41 |
| Consensus MFE | -18.41 |
| Energy contribution | -18.63 |
| Covariance contribution | 0.22 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.622614 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16609133 107 - 22407834 AUAUAAGAAGAGCAGAAUCAAACUAAACGGGGAACGGGUAUGGGAUUCCCCCAAACAAUGAGUUUGGGCCAAGACCAUGCCAAAACGGACAUGCCAACGGCAACAAC .........(.(((...((........((.....))(((((((..((..(((((((.....)))))))..))..)))))))......))..))))...(....)... ( -29.80) >DroSec_CAF1 64283 107 - 1 AUAAAAGAAGAGCAGAAUCAAACUAAACGGGGAAUGGGUAUGGGCUUCCCCCAAACAAUGAGUUUGGGCCAAGACCAUGCCAAAACGGACAUGCCAGCGGCAACAAC ...........((.......................(((((((.(((..(((((((.....)))))))..))).))))))).....((.....)).))(....)... ( -29.20) >DroSim_CAF1 63485 107 - 1 AUAAAAGAAGAGCAGAAUCAAACUAAAUGGGGAAUGGGUAUGGGCUUCCCCCAAACAAUGAGUUUGGGCCAAGACCAUGCCAAAACGGACAUGCCAGCGGCAACAAC ...........((.......................(((((((.(((..(((((((.....)))))))..))).))))))).....((.....)).))(....)... ( -29.20) >DroEre_CAF1 65326 99 - 1 --AACAGAAGAGCAGAAUCUAACUAAACGUGGAAU------GGGAUUCCCCCAAACAAUGAGUUUGGGCCAAGUCCAUGCCAAAACGGACAUGCCAGCGGCAACAAC --.......(.(((...(((.......((((((..------.((.....(((((((.....)))))))))...)))))).......)))..))))...(....)... ( -24.54) >DroYak_CAF1 63068 99 - 1 --AAAAGAAGAGCAGAAUCUAACUAAACGGGGAAU------GGGAUUCCCCCAAACAAUGAGUUUGGGCCAAGUCCAUGCCAAAACGGACAUGCCAGCGGCAACAAC --.........((...............(((((((------...)))))))(((((.....)))))(((...((((..........))))..))).))(....)... ( -25.30) >DroAna_CAF1 5912 83 - 1 ------UGGGAACAGA---------AAUGGGGA--------GA-UAUUUCCCAAACAAUGGGUUUGGGCCAAGUCCAUGCCAAAACGGACAUGCCAGCAGCAGCAGC ------(((.(.((..---------..))((((--------(.-...)))))........(((.(((((...))))).)))..........).)))((....))... ( -20.40) >consensus __AAAAGAAGAGCAGAAUCAAACUAAACGGGGAAU______GGGAUUCCCCCAAACAAUGAGUUUGGGCCAAGACCAUGCCAAAACGGACAUGCCAGCGGCAACAAC .............................(((((...........)))))((((((.....))))))(((.....((((((.....)).)))).....)))...... (-18.41 = -18.63 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:11 2006