Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 16,608,057 – 16,608,149 |
Length | 92 |
Max. P | 0.868964 |
Location | 16,608,057 – 16,608,149 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 80.97 |
Mean single sequence MFE | -23.28 |
Consensus MFE | -19.99 |
Energy contribution | -19.68 |
Covariance contribution | -0.31 |
Combinations/Pair | 1.32 |
Mean z-score | -1.77 |
Structure conservation index | 0.86 |
SVM decision value | 0.86 |
SVM RNA-class probability | 0.868964 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16608057 92 + 22407834 GAGCAGGGUGGGCGUGGCGGCACACGCAUAUACUUCCUGCUUGAACU------ACUACAAAAA-----------AUAAAUAAUAAAGAAAAAUGCUGGAGCCGGGCAAA ((((((((((.(((((......)))))...)))..))))))).....------..........-----------..................((((.(...).)))).. ( -24.30) >DroSec_CAF1 63243 92 + 1 GAGCAGGGUGGGCGUGGCGGCACACGCAUAGACUUCCUGCUUGAACU------ACUACAAAAA-----------AUAAAUAAUAAAGAAAAAUGCUGGAGCCGGGCAAA ((((((((.(.(((((......))))).....).)))))))).....------..........-----------..................((((.(...).)))).. ( -23.70) >DroSim_CAF1 62460 92 + 1 GAGCAGGGUGGGCGUGGCGGCACACGCAUAGACUUCCUGCUUGAACU------ACUACAAAAA-----------AUAAAUAAUAAAGAAAAAUGCUGGAGCCGGGCAAA ((((((((.(.(((((......))))).....).)))))))).....------..........-----------..................((((.(...).)))).. ( -23.70) >DroYak_CAF1 62005 92 + 1 GAGCAGGGUGGGCGUGGCGGCACACGCAUAGACUUCCUGCUUGAACU------ACUACAAAAA-----------AUAAAUAAUAAAGAAAAAUGCUGGAGCCGGGCAAA ((((((((.(.(((((......))))).....).)))))))).....------..........-----------..................((((.(...).)))).. ( -23.70) >DroAna_CAF1 4630 100 + 1 AGGGGAAGUGGGCGUGG---UUCACGCAUAGAUUUCCUGCUUCCUCCAUCAUCACAACAAAAAAACGAAAAAUAAUAAAUAUUUUAGUAAAAUGCUG------AGCGAA .(((((((..((((((.---..)))))...(....))..))))).))...................................((((((.....))))------)).... ( -21.00) >consensus GAGCAGGGUGGGCGUGGCGGCACACGCAUAGACUUCCUGCUUGAACU______ACUACAAAAA___________AUAAAUAAUAAAGAAAAAUGCUGGAGCCGGGCAAA ((((((((.(.(((((......))))).....).))))))))..................................................((((.(...).)))).. (-19.99 = -19.68 + -0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:10 2006