Locus 5871

Sequence ID 2L_DroMel_CAF1
Location 16,607,932 – 16,608,028
Length 96
Max. P 0.584581
window9320

overview

Window 0

Location 16,607,932 – 16,608,028
Length 96
Sequences 6
Columns 97
Reading direction reverse
Mean pairwise identity 81.74
Mean single sequence MFE -22.78
Consensus MFE -16.22
Energy contribution -17.28
Covariance contribution 1.06
Combinations/Pair 1.21
Mean z-score -1.41
Structure conservation index 0.71
SVM decision value 0.10
SVM RNA-class probability 0.584581
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16607932 96 - 22407834
UCUUC-UUUUUUUUUAUCAACACUUUUGCCUUGGGGUCCGAGGAAAUGCGUAAAAAUUAUGCCACAGCUUGAACGACUCGACACGAGCGAAAGAAAA
..(((-(((.......(((((.......((((((...))))))....(((((.....)))))....).)))).((.((((...)))))))))))).. ( -19.50)
>DroVir_CAF1 31202 87 - 1
UCC--------CCUUGUCGCAUGUUACGCCGCAGUCGCUUAGUAAAUGCGCAAUAAUUAUGCCACAUCUUGAUCGGGGCUCCACGAGCA--GGAAAA
(((--------(((.(((((((.((((...((....))...))))))))(((.......)))........))).)))((((...)))).--)))... ( -22.00)
>DroSec_CAF1 63117 97 - 1
UCUUCUUUUUUUUUUAUCAACACUUUUGCCUGGGGGUCCGAGCAAAUGCGUAAAAAUUAUGCCACAGCUUGAACGACUCGACACGAGCAAAGGAAAA
......................((((((((((.((((((((((....(((((.....)))))....)))))...)))))..)).).))))))).... ( -23.80)
>DroSim_CAF1 62335 96 - 1
UCUUU-UUUUUUUUUAUCAACACUUUUGCCUGGGGGUCCGAGCAAAUGCGUAAAAAUUAUGCCACAGCUUGAACGACUCGACACGAGCAAAGGAAAA
.....-................((((((((((.((((((((((....(((((.....)))))....)))))...)))))..)).).))))))).... ( -23.80)
>DroEre_CAF1 64136 90 - 1
-------UUUUUUUUAUCAACACUUUUGCCUGGGGGUCCGAGCAAAUGCGUAAAAAUUAUGCCACAGCUUGAACGACUCGACACGAGCAAAGGAAAA
-------...............((((((((((.((((((((((....(((((.....)))))....)))))...)))))..)).).))))))).... ( -23.80)
>DroYak_CAF1 61890 86 - 1
-----------UUUUAUCAACACUUUUGCCUGGGGGUCCGAGCAAAUGCGUAAAAAUUAUGCCACAGCUUGAACGACUCGACACGAGCAAAGGAAAA
-----------...........((((((((((.((((((((((....(((((.....)))))....)))))...)))))..)).).))))))).... ( -23.80)
>consensus
UCU____UUUUUUUUAUCAACACUUUUGCCUGGGGGUCCGAGCAAAUGCGUAAAAAUUAUGCCACAGCUUGAACGACUCGACACGAGCAAAGGAAAA
......................(((((((.((.((((((((((....(((((.....)))))....)))))...)))))....)).))))))).... (-16.22 = -17.28 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:09 2006