Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 16,601,447 – 16,601,547 |
Length | 100 |
Max. P | 0.742426 |
Location | 16,601,447 – 16,601,547 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 85.42 |
Mean single sequence MFE | -21.68 |
Consensus MFE | -16.76 |
Energy contribution | -16.48 |
Covariance contribution | -0.28 |
Combinations/Pair | 1.27 |
Mean z-score | -1.77 |
Structure conservation index | 0.77 |
SVM decision value | 0.45 |
SVM RNA-class probability | 0.742426 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16601447 100 - 22407834 --------AUUUAAGCCUAGAACAAAUCAGUUCAAAACGAUACUCAUGCCAAAAUCUGUUUAUAGACCAUGGUGAAGCUCACCUUGUCAAACGAACUGGCAGGUGUAA --------......((((.((((......))))..............((((...((.((((...(((...((((.....))))..)))))))))..)))))))).... ( -23.00) >DroSec_CAF1 56725 100 - 1 --------UUCUAAACCUAGAACAAAUCAGUUCAAAUCAACACUCAUGCCAAAAUCUGUUUAUAGACCAUGGUGAAGCUCACCUUGUCAAACCAACUGGCAGGUGUAA --------...........((((......))))......(((((..(((((......((((...(((...((((.....))))..)))))))....)))))))))).. ( -22.90) >DroSim_CAF1 55518 100 - 1 --------UUCUAAACCUAGAACAAAUCAGUUCAAAUCAACACUCAUGCCAAAAUCUGUUUAUAGACCAUGGUGAAGCUCACCUUGUCAAACCAACUGGCAGGUGUAA --------...........((((......))))......(((((..(((((......((((...(((...((((.....))))..)))))))....)))))))))).. ( -22.90) >DroEre_CAF1 57623 108 - 1 AUAACAUGUUCUAAACGUAGAAAAAUUCAGUUGAAAUCGACACUCAUGCUAAAAUCUGUUUAUAGACCAUUGUAAAGCUUAGCUUGUCGAACAAACUGGCAGGUGUAA ...((((.(((((....)))))....((((((....((((((.....(((((......(((((((....)))))))..))))).))))))...))))))...)))).. ( -19.90) >DroYak_CAF1 55347 108 - 1 AUAAAAUGCUUUGAACGUAGAACAUAUCAGUUGCAAUCGACACUCUUGCCAAAAUCUGUUUAUAGACCAUUGUGAAGCUCACCUUGUCAAACGAACUGGCAGGUGUAG ......(((.((((............))))..)))......((.(((((((...((.((((...(((.(..(((.....)))..))))))))))..))))))).)).. ( -19.70) >consensus ________UUCUAAACCUAGAACAAAUCAGUUCAAAUCGACACUCAUGCCAAAAUCUGUUUAUAGACCAUGGUGAAGCUCACCUUGUCAAACCAACUGGCAGGUGUAA .........((((....))))..................(((((..(((((.....(((((...(((...((((.....))))..))))))))...)))))))))).. (-16.76 = -16.48 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:08 2006