Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,786,904 – 1,787,020 |
Length | 116 |
Max. P | 0.794845 |
Location | 1,786,904 – 1,787,020 |
---|---|
Length | 116 |
Sequences | 3 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 93.68 |
Mean single sequence MFE | -23.37 |
Consensus MFE | -20.97 |
Energy contribution | -21.31 |
Covariance contribution | 0.34 |
Combinations/Pair | 1.09 |
Mean z-score | -2.10 |
Structure conservation index | 0.90 |
SVM decision value | 0.60 |
SVM RNA-class probability | 0.794845 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1786904 116 + 22407834 CUUUCACACUUUUCUGACAGCAAGCUCACCUCAAUUUAUAAUUUGUCCAGAAAAUUAAUUAAAAUUUGCCGCCAGGCCUUCUGCGAAAUCGAGCUGACUGUCCAUUUAUUGUAAUU .....(((.......(((((..(((((....(((........)))(((((((((((......)))))(((....)))..)))).))....)))))..))))).......))).... ( -24.24) >DroSec_CAF1 43814 116 + 1 CUUUCACACUUUUCUGACAGCAAGCGCACCUCAAUUUAUAAUUUGUGCAGCAAAUUAAUUAAAAUUUGCCGCCAGGCCUUCCACAAAAUCGGGCUGACUGUCCAUUUAUUGUAAUU .....(((.......(((((..(((.(................((.((.(((((((......))))))).))))((....))........).)))..))))).......))).... ( -23.44) >DroYak_CAF1 55049 116 + 1 CUUUCACACUCUCCUGACAGCAAGCUCACCUCAAUUUAUAAUUUGUCCAGCAAAUUAAUUAAAAUUUGCCGCCAGGCCUGCCACAAAAUCGGGCUGACUGUUCAUUUAUUGUAAUU .....(((.......(((((..(((((...........(((((((.....)))))))..........(((....))).............)))))..))))).......))).... ( -22.44) >consensus CUUUCACACUUUUCUGACAGCAAGCUCACCUCAAUUUAUAAUUUGUCCAGCAAAUUAAUUAAAAUUUGCCGCCAGGCCUUCCACAAAAUCGGGCUGACUGUCCAUUUAUUGUAAUU .....(((.......(((((..(((((...........(((((((.....)))))))..........(((....))).............)))))..))))).......))).... (-20.97 = -21.31 + 0.34)
Location | 1,786,904 – 1,787,020 |
---|---|
Length | 116 |
Sequences | 3 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 93.68 |
Mean single sequence MFE | -32.83 |
Consensus MFE | -26.05 |
Energy contribution | -26.61 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.06 |
Mean z-score | -2.75 |
Structure conservation index | 0.79 |
SVM decision value | 0.46 |
SVM RNA-class probability | 0.745829 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1786904 116 - 22407834 AAUUACAAUAAAUGGACAGUCAGCUCGAUUUCGCAGAAGGCCUGGCGGCAAAUUUUAAUUAAUUUUCUGGACAAAUUAUAAAUUGAGGUGAGCUUGCUGUCAGAAAAGUGUGAAAG ..(((((.......((((((.(((((.(((((.(((.....))).(((.(((((......))))).)))...............)))))))))).)))))).......)))))... ( -30.44) >DroSec_CAF1 43814 116 - 1 AAUUACAAUAAAUGGACAGUCAGCCCGAUUUUGUGGAAGGCCUGGCGGCAAAUUUUAAUUAAUUUGCUGCACAAAUUAUAAAUUGAGGUGCGCUUGCUGUCAGAAAAGUGUGAAAG ..(((((.......((((((.((((((......)))...((((.((((((((((......)))))))))).(((........)))))))..))).)))))).......)))))... ( -35.54) >DroYak_CAF1 55049 116 - 1 AAUUACAAUAAAUGAACAGUCAGCCCGAUUUUGUGGCAGGCCUGGCGGCAAAUUUUAAUUAAUUUGCUGGACAAAUUAUAAAUUGAGGUGAGCUUGCUGUCAGGAGAGUGUGAAAG ...............(((.((.(((((....)).)))...((((((((((((((((((((((((((.....)))))))...))))))))....))))))))))).)).)))..... ( -32.50) >consensus AAUUACAAUAAAUGGACAGUCAGCCCGAUUUUGUGGAAGGCCUGGCGGCAAAUUUUAAUUAAUUUGCUGGACAAAUUAUAAAUUGAGGUGAGCUUGCUGUCAGAAAAGUGUGAAAG ..(((((.......((((((.((((((......)))...((((..(((((((((......)))))))))..(((........)))))))..))).)))))).......)))))... (-26.05 = -26.61 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:23 2006