Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 16,601,101 – 16,601,198 |
Length | 97 |
Max. P | 0.760049 |
Location | 16,601,101 – 16,601,198 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 94.54 |
Mean single sequence MFE | -20.20 |
Consensus MFE | -17.21 |
Energy contribution | -17.21 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.43 |
Structure conservation index | 0.85 |
SVM decision value | 0.50 |
SVM RNA-class probability | 0.760049 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16601101 97 - 22407834 GGCCCAGAAUGCCGAUGGACAAGUGUGUGUGUGUGUGUGGGCCAAACAGAUAAAAGAGAUGAAGACGUGGAAGCGAAAUGAGUUUAAAGUCAAUAAC ((((((..((((..(((.((....)).)))..)))).))))))....................(((....((((.......))))...)))...... ( -21.90) >DroSec_CAF1 56386 95 - 1 GGCCCAGAAUGCCGAUGGACAAGUGUGUGU--GUGUGUGGGCCAAACAGAUAAAAGAGAUGAAGACGUGGAAGCGAAAUGAGUUUAAAGUCAAUAAC ((((((..((((..(((.((....)).)))--)))).))))))....................(((....((((.......))))...)))...... ( -20.60) >DroSim_CAF1 55181 95 - 1 GGCCCAGAAUGCCGAUGGACAAGUGUGUGU--GUGUGUGGGCCAAACAGAUAAAAGAGAUGAAGACGUGGAAGCGAAAUGAGUUUAAAGUCAAUAAC ((((((..((((..(((.((....)).)))--)))).))))))....................(((....((((.......))))...)))...... ( -20.60) >DroEre_CAF1 57300 89 - 1 GGCCCAGAAUGCCGAUGGACAAGUGUG--------UGUGGGCCAAACAGAUAAAGGAGAUGAAGACGUGGAAGCAAAAUGAGUUUAAAGUCAAUAAC ((((((..(((((.........).)))--------).))))))....................(((....((((.......))))...)))...... ( -18.60) >DroYak_CAF1 55008 89 - 1 GGCCCAGAAUGCCGAUGGACAAGUGUG--------UGUGGGCCAAACAGAUAAAAGAGAUGAAGACGUGGAAGCGAAAUGAGUUUAAAGUCAAUAAC ((((((..(((((.........).)))--------).))))))....................(((....((((.......))))...)))...... ( -19.30) >consensus GGCCCAGAAUGCCGAUGGACAAGUGUGUGU__GUGUGUGGGCCAAACAGAUAAAAGAGAUGAAGACGUGGAAGCGAAAUGAGUUUAAAGUCAAUAAC ((((((.(..........((....)).........).))))))....................(((....((((.......))))...)))...... (-17.21 = -17.21 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:07 2006