Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 16,599,378 – 16,599,468 |
Length | 90 |
Max. P | 0.530281 |
Location | 16,599,378 – 16,599,468 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 90.02 |
Mean single sequence MFE | -18.82 |
Consensus MFE | -15.32 |
Energy contribution | -15.16 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.07 |
Mean z-score | -1.35 |
Structure conservation index | 0.81 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.530281 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16599378 90 - 22407834 AUCCAUGCCAAAGUUUGCCAUGAGUAAACGAUAUGUACAU------AUAUUCAGAUUCUGGAUAAAUUUUCCAUGUUAAUUAGCUGGCAUUCGAGG .((.((((((..((((((.....))))))((((((.....------.(((((((...))))))).......)))))).......))))))..)).. ( -20.02) >DroSec_CAF1 54677 86 - 1 AUCCAUGCCAAAGUUUGCCAUGAGUAAACGAUAUGU----------AUAUUCAGAUUCUGGAUAAAUUUUCCAUGUUAAUUAGCUGGCAUUCGAGG .((.((((((..((((((.....))))))((((((.----------.(((((((...))))))).......)))))).......))))))..)).. ( -18.40) >DroSim_CAF1 53471 86 - 1 AUCCAUGCCAAAGUUUGCCAUGAGUAAACGAUAUGU----------AUAUUCAGAUUCUGGAUAAAUUUUCCAUGUUAAUUAGCUGGCAUUCGAGG .((.((((((..((((((.....))))))((((((.----------.(((((((...))))))).......)))))).......))))))..)).. ( -18.40) >DroEre_CAF1 55523 82 - 1 AUCCAUGCCAAAGUUUGCCAUGAGUAAGCGAUU--------------UAUUCAAAUUCUGGAUAAAUUUUCCAUGUUAAUUAGCUGGCAUUCAAGA ....((((((..((((((.....))))))((((--------------((((((.....))))))))))................))))))...... ( -18.80) >DroYak_CAF1 53269 96 - 1 AUCCAUGCCAAAGUUUGCCAUGAGUAAACGAUAUAUACAUACAUAUAUAUUCAGAUUCCGGAUAAAUUUUCCAUGUUAAUUAGCUGGCAUUCGAGG .((.((((((..((((((.....))))))((((((((......))))))))........(((.......)))............))))))..)).. ( -18.50) >consensus AUCCAUGCCAAAGUUUGCCAUGAGUAAACGAUAUGU__________AUAUUCAGAUUCUGGAUAAAUUUUCCAUGUUAAUUAGCUGGCAUUCGAGG ....((((((..((((((.....))))))..............................(((.......)))............))))))...... (-15.32 = -15.16 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:06 2006