Locus 5867

Sequence ID 2L_DroMel_CAF1
Location 16,597,259 – 16,597,364
Length 105
Max. P 0.569455
window9316

overview

Window 6

Location 16,597,259 – 16,597,364
Length 105
Sequences 5
Columns 109
Reading direction forward
Mean pairwise identity 88.49
Mean single sequence MFE -18.20
Consensus MFE -12.28
Energy contribution -12.88
Covariance contribution 0.60
Combinations/Pair 1.10
Mean z-score -2.11
Structure conservation index 0.67
SVM decision value 0.07
SVM RNA-class probability 0.569455
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16597259 105 + 22407834
UUUUCAAAUUUUGAGGAACAUAAUGCAAUUAAAAAUAAUUGCACAGCGAAAACUAGUUCACGAAAUCAAUUUCAAAAUUGCUGAAACUUAGAAAAAU----UAAGCCGG
........(((((((........((((((((....))))))))(((((((......)))..((((....))))......))))...)))))))....----........ ( -19.20)
>DroSec_CAF1 52529 104 + 1
UUUUCAAAUUUCGAGGAACAUAAUGCAAUUAAAAAUAAUUGCACAGCGAAAACUAGUUCACGAAAUCAAUUUCAAAAUUGCUGAAACUUCGAAAAAU-----AAACCGG
........((((((((.......((((((((....))))))))(((((((......)))..((((....))))......))))...))))))))...-----....... ( -23.50)
>DroSim_CAF1 51358 104 + 1
UUUUCAAAUUUCGAGGAACAUAAUGCAAUUAAAAAUAAUUGCACAGCGAAAACUAGUUCACGAAAUCAAUUUCAAAAUUGCUGAAACUUCGAAAAAU-----AAACCGG
........((((((((.......((((((((....))))))))(((((((......)))..((((....))))......))))...))))))))...-----....... ( -23.50)
>DroEre_CAF1 53464 109 + 1
UAUUCAAAUUCCAUGGAACAUAAUGCAAAUUAAAACAAAUGCACUGCGGAAAUUAGUUCACAAAAUCAAUUUUAAAAUUGCUGAUACUUAGAAAGAUAUGCAAAACCGG
.............(((.......((((............)))).((((((((((.(((.....))).))))))...(((.((((...))))...))).))))...))). (  -7.90)
>DroYak_CAF1 51168 107 + 1
U--UCAAAUUUUGAGGAACGUAAUGCAAUUAAAAAUAAUUGCACAGCGAAAACUAGUUCACAAAAUCAAUUUCAAAAUUGCUGAAACUUAGAAAUAUAUGCAAAACCGG
(--(((((((((((((...((..((((((((....))))))))..))(((......)))..........))))))))))..))))........................ ( -16.90)
>consensus
UUUUCAAAUUUCGAGGAACAUAAUGCAAUUAAAAAUAAUUGCACAGCGAAAACUAGUUCACGAAAUCAAUUUCAAAAUUGCUGAAACUUAGAAAAAU_____AAACCGG
..............((.......((((((((....))))))))(((((((......)))..((((....))))......))))......................)).. (-12.28 = -12.88 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:05 2006