Locus 5866

Sequence ID 2L_DroMel_CAF1
Location 16,596,042 – 16,596,158
Length 116
Max. P 0.522114
window9315

overview

Window 5

Location 16,596,042 – 16,596,158
Length 116
Sequences 6
Columns 119
Reading direction forward
Mean pairwise identity 76.20
Mean single sequence MFE -24.80
Consensus MFE -12.20
Energy contribution -14.03
Covariance contribution 1.84
Combinations/Pair 1.18
Mean z-score -1.77
Structure conservation index 0.49
SVM decision value -0.02
SVM RNA-class probability 0.522114
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16596042 116 + 22407834
GUU--GCAUUGUCAACGUUCCAAAACAGCCCCAGCAGCGUAUGGCAUACAAUUUAAAAAUGUAUCCA-AGAGAUACAUUACACAUUACGGCCAUGGCUUGCCAAGUCUUGACUUGGAAA
(((--(......)))).((((((..(((..(..(((((.((((((............((((((((..-...))))))))..........)))))))).)))...)..)))..)))))). ( -28.85)
>DroPse_CAF1 61882 107 + 1
GAU--ACAUUGUCAACGUUCCAAAACA---------GCGUAUGGCAUACAAUUUAAAAAUGUAUCCA-AGAGAUACAUUACACAUUACGGCCAUGGCUUGCCAAGUCUUGACUUGGAAA
...--.....(((.(((((.......)---------))))(((((............((((((((..-...))))))))..........))))))))...((((((....))))))... ( -25.05)
>DroGri_CAF1 21701 106 + 1
UUUGUAUAUUGUCAUCGCGCCAAAA-------AGCGGCGUAUGGCAAACUAUUUAAA-AUGCAUCCAAAGAGAUACAUUACACACUGCGAGCUUGGC-UGCCAAGUCU----CUGGAAA
...(((..(((((((.(((((....-------...)))))))))))).........(-(((.(((......))).))))......)))((((((((.-..))))).))----)...... ( -26.90)
>DroWil_CAF1 56954 99 + 1
GCA--GCAUUGUCAACACGCCAA-ACAGCC----------------AACAAUUUAAAAAUGUAUCCA-AGAGAUACAUUACACAUUACGGCCAUGGCUUGCCAAGUCUUGACUUGGAAA
...--..........((.((((.-...(((----------------...........((((((((..-...)))))))).........)))..)))).))((((((....))))))... ( -22.75)
>DroMoj_CAF1 15126 103 + 1
UUUGCACAUUGUCUAUGCGCCAAG---------CCAGCGUAUGGUGAACUAUUUAAA-AUGUAUCCAAAGAGAUACAAAAUACAUUACGAAUGCGGU-UGCCAAGUCU-----UGGAAA
.(((((..((((((((((((....---------...)))))))).............-.((((((......)))))).........)))).))))).-..(((.....-----)))... ( -20.20)
>DroPer_CAF1 61032 107 + 1
GAU--ACAUUGUCAACGUUCCAAAACA---------GCGUAUGGCAUACAAUUUAAAAAUGUAUCCA-AGAGAUACAUUACACAUUACGGCCAUGGCUUGCCAAGUCUUGACUUGGAAA
...--.....(((.(((((.......)---------))))(((((............((((((((..-...))))))))..........))))))))...((((((....))))))... ( -25.05)
>consensus
GUU__ACAUUGUCAACGCGCCAAAACA_________GCGUAUGGCAAACAAUUUAAAAAUGUAUCCA_AGAGAUACAUUACACAUUACGGCCAUGGCUUGCCAAGUCUUGACUUGGAAA
......(((.(((.......................((.....))............((((((((......)))))))).........))).))).....((((((....))))))... (-12.20 = -14.03 +   1.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:04 2006