Locus 5865

Sequence ID 2L_DroMel_CAF1
Location 16,595,867 – 16,595,978
Length 111
Max. P 0.925919
window9314

overview

Window 4

Location 16,595,867 – 16,595,978
Length 111
Sequences 5
Columns 114
Reading direction reverse
Mean pairwise identity 89.88
Mean single sequence MFE -16.31
Consensus MFE -13.28
Energy contribution -12.88
Covariance contribution -0.40
Combinations/Pair 1.15
Mean z-score -1.89
Structure conservation index 0.81
SVM decision value 1.17
SVM RNA-class probability 0.925919
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16595867 111 - 22407834
GCAUUGGCCAUUGCCAAUUAAUCAAAAAACGAGAAAAAAAAAAAACAGCAGAAAAGCGCUUAAAAAACCCC---AAAAAAAAGACCUGCAAUUGAUUUCAAUAUUUCAGCAGCA
((((((((....))))))............((((.............((((....................---...........)))).((((....)))).)))).)).... ( -14.98)
>DroSec_CAF1 51176 107 - 1
GCAUUGGCCAUUGCCAAUUAAUCAAAAAACGAGAAAA---AAAAGCAGCAGAAAAGCGCUUAAAAAACCCC---AAA-AAAAGACCUGCAAUUGAUUUCAAUAUUUCAGCAGCA
((((((((....))))))............((((...---..((((.((......))))))..........---...-............((((....)))).)))).)).... ( -16.70)
>DroSim_CAF1 49985 107 - 1
GCAUUGGCCAUUGCCAAUUAAUCAAAAAACGAGAAAA---AAAAGCAGCAGAAAAGCGCUUAAAAAACCCC---AAA-AAAAGACCUGCAAUUGAUUUCAAUAUUUCAGCAGCA
((((((((....))))))............((((...---..((((.((......))))))..........---...-............((((....)))).)))).)).... ( -16.70)
>DroEre_CAF1 52105 114 - 1
GCAUUGGCCAUUGCCAAUUAAUCAAAAAACGAAGAAAAAAAAAAGCAGCAGAAAAGCGCUUAAAAAACCCCGAAAAAAAAGAGACCUACAAUUGAUUUCAAUAUUUCAGCAGGA
((((((((....))))))...............((((.....((((.((......))))))...................((((.(.......).))))....)))).)).... ( -16.60)
>DroYak_CAF1 49818 108 - 1
GCAUUGGCCAUUGCCAAUUAAUCAAAAAACGUAGAAAAAAAA---CACCAGAAGAGCGCUUUAAAAAC---GCAAAAAAAAAGACCUGGAAUUGAUUUCAAUAUUUCAGCAGCA
((((((((....))))))............((.((((.....---..((((....(((.........)---))............)))).((((....)))).)))).)).)). ( -16.59)
>consensus
GCAUUGGCCAUUGCCAAUUAAUCAAAAAACGAGAAAAAAAAAAAGCAGCAGAAAAGCGCUUAAAAAACCCC___AAAAAAAAGACCUGCAAUUGAUUUCAAUAUUUCAGCAGCA
((((((((....))))))............((((.............((((..................................)))).((((....)))).)))).)).... (-13.28 = -12.88 +  -0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:03 2006