Locus 5864

Sequence ID 2L_DroMel_CAF1
Location 16,594,624 – 16,594,717
Length 93
Max. P 0.714901
window9313

overview

Window 3

Location 16,594,624 – 16,594,717
Length 93
Sequences 4
Columns 102
Reading direction reverse
Mean pairwise identity 88.85
Mean single sequence MFE -26.20
Consensus MFE -17.91
Energy contribution -18.48
Covariance contribution 0.56
Combinations/Pair 1.04
Mean z-score -2.23
Structure conservation index 0.68
SVM decision value 0.38
SVM RNA-class probability 0.714901
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16594624 93 - 22407834
-----ACACAUUU----UUGGGUGUGUGGGUGCAGUUAGUACAAAACACUUGAAUUGUUGUUCUGGGGCAAUAAAUUGAAAUGCACAAAAGAGCUUGUGAAA
-----.((((..(----(..(((((....((((.....))))...)))))..)).....(((((..((((...........))).)...))))).))))... ( -23.50)
>DroSec_CAF1 49915 101 - 1
GUGU-UCACAUUUUUUUUUCGGUGUGUGGGUGCAGUUAGUACCAAACUCUUGAAUUGUUGUUCUGGGGCAAUAAAUUGAAAUGCACAAAAGAGCUUGUGAAA
...(-(((((..((((((...((((((.(((((.....)))))......(..(.((((((((....)))))))).)..).)))))).))))))..)))))). ( -28.20)
>DroSim_CAF1 48724 101 - 1
GUGU-UCACAUUUUUUUUUCGGUGUGUGGGUGCAGUUAGUACCAAACUCUUGAAUUGUUGUUCUGGGGCAAUAAAUUGAAAUGCACAAAAGAGCUUGUGAAA
...(-(((((..((((((...((((((.(((((.....)))))......(..(.((((((((....)))))))).)..).)))))).))))))..)))))). ( -28.20)
>DroYak_CAF1 48564 94 - 1
----AGCAGAGUU----UUUGGUGUGUGGGUGCAGUUAGCACAGAACUCUUGAAUUGUUGUUCUGGGGCAAUAAAUUGAAAUGCACAAAGGAGCUUGUGAAA
----.(((.((((----(((..(((((..((((.....)))).......(..(.((((((((....)))))))).)..)...))))).)))))))))).... ( -24.90)
>consensus
_____UCACAUUU____UUCGGUGUGUGGGUGCAGUUAGUACAAAACUCUUGAAUUGUUGUUCUGGGGCAAUAAAUUGAAAUGCACAAAAGAGCUUGUGAAA
......((((...........((((((.(((((.....)))))......(..(.((((((((....)))))))).)..).)))))).........))))... (-17.91 = -18.48 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:01 2006