Locus 5863

Sequence ID 2L_DroMel_CAF1
Location 16,591,674 – 16,591,767
Length 93
Max. P 0.903669
window9312

overview

Window 2

Location 16,591,674 – 16,591,767
Length 93
Sequences 5
Columns 108
Reading direction forward
Mean pairwise identity 79.14
Mean single sequence MFE -23.58
Consensus MFE -12.54
Energy contribution -13.38
Covariance contribution 0.84
Combinations/Pair 1.07
Mean z-score -2.25
Structure conservation index 0.53
SVM decision value 1.03
SVM RNA-class probability 0.903669
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16591674 93 + 22407834
ACU-UUUUUAAAU-------------AUCAAUUUAUAUGUAUAAAUAUACUUGAUAU-CAGCUUACGCAUUGGCACUGUGCAUGUGUGAGUUGCUGGAUAUAUGUGAG
...-.......((-------------(((((..(((((......))))).)))))))-((((((((((((..((.....))))))))))))))............... ( -21.60)
>DroSec_CAF1 46921 94 + 1
ACCAAUUUUAAAU-------------ACCCAUUUAAAUUUAUAAAUAUCCUUGAUAU-CAGCUUACGCAUUUGCACUGUGCAUGUGUGAGUUGGUGGAUAUAUGUGAG
......(((((((-------------....))))))).(((((.((((((.....((-(((((((((((..(((.....)))))))))))))))))))))).))))). ( -27.80)
>DroSim_CAF1 45730 94 + 1
ACCAAUUUUAAAU-------------ACCCAUUUAAAUUUAUAAAUAUCCUUGAUAU-CAGCUUACGCAUUUGCACUGUGCAUGUGUGAGUUGGUGGAUAUAUGUGAG
......(((((((-------------....))))))).(((((.((((((.....((-(((((((((((..(((.....)))))))))))))))))))))).))))). ( -27.80)
>DroEre_CAF1 45349 108 + 1
AUUAUUUUUAAAUACCCCCUUUUAAUACCCAUUUAAAUUUGUUCAUAUGCUUGAUAACCAGCUUUCGCAUUUGCACUGUGCAUAAGCGAGUUGAUGGAUAUCUGUGAG
..........................................(((((.....((((.(((...(((((...(((.....)))...)))))....))).))))))))). ( -18.20)
>DroYak_CAF1 45540 104 + 1
ACUCUUUUUAGAUACACCUUU----UACCCAUUUCAAUUUCUACAUAUCCUUGGCAACGAGCUCACGCAUUUGCACUGUGCAUGAGUGAGUUGGUGAAUAUCCGUGAG
..............(((..((----((((...((((.............((((....))))((((.((((.......)))).))))))))..)))))).....))).. ( -22.50)
>consensus
ACUAUUUUUAAAU_____________ACCCAUUUAAAUUUAUAAAUAUCCUUGAUAU_CAGCUUACGCAUUUGCACUGUGCAUGUGUGAGUUGGUGGAUAUAUGUGAG
..........................................................((((((((((((..((.....))))))))))))))............... (-12.54 = -13.38 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:00 2006