Locus 5861

Sequence ID 2L_DroMel_CAF1
Location 16,588,770 – 16,588,876
Length 106
Max. P 0.929302
window9306

overview

Window 6

Location 16,588,770 – 16,588,876
Length 106
Sequences 4
Columns 109
Reading direction reverse
Mean pairwise identity 74.24
Mean single sequence MFE -16.00
Consensus MFE -9.35
Energy contribution -10.47
Covariance contribution 1.12
Combinations/Pair 1.11
Mean z-score -2.03
Structure conservation index 0.58
SVM decision value 1.20
SVM RNA-class probability 0.929302
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16588770 106 - 22407834
UUAUUGAUAAUGGGUGAAAGUCUUUUAAGUGUUAAAA---AAAAAACAUUAAAUUGCGCAAGCUAGCAAUACCCCAUUAUCUAAUAGCCAUUUUCUUUUAAUACCGACU
((((((((((((((.(...........((((((....---....))))))..(((((........))))).)))))))))).)))))...................... ( -21.40)
>DroSec_CAF1 44081 94 - 1
UUAUUGAUAAUAGGAGAAAGUCUUUUAAAAGUAAAAAAAAAAAAAACAUUAAAUUGCGCAA-CUAGCAAUAGCCUAUUAUCGA-----------CUUU---UAUCGACU
...(((((((((((........(((((....)))))................(((((....-...)))))..)))))))))))-----------....---........ ( -16.60)
>DroSim_CAF1 42890 94 - 1
UUAUUGAUAAUAGGAGAAAGUCUUUUAAAAGUAAAAAAAAAAAAAACAUUAAAUUGCGCAA-CUAGCAAUAGCCUAUUAUCGA-----------CUUU---UAUCGACU
...(((((((((((........(((((....)))))................(((((....-...)))))..)))))))))))-----------....---........ ( -16.60)
>DroYak_CAF1 42686 96 - 1
UUAUAGCUUAUCGGAUAAACUCUUUAAAAUGUUUAAAAAGA------AUUAAAUUUCACAACUUAGCUAUACCCCAUUAUC-------CAUGCUUUUUUAAUACCGACU
.(((((((.....(.(((((..........)))))....((------(......))).).....)))))))..........-------..................... (  -9.40)
>consensus
UUAUUGAUAAUAGGAGAAAGUCUUUUAAAAGUAAAAAAAAAAAAAACAUUAAAUUGCGCAA_CUAGCAAUACCCCAUUAUCGA___________CUUU___UACCGACU
.....(((((((((........(((((.....)))))...............(((((........)))))..)))))))))............................ ( -9.35 = -10.47 +   1.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:55 2006