Locus 5857

Sequence ID 2L_DroMel_CAF1
Location 16,580,078 – 16,580,194
Length 116
Max. P 0.935133
window9295

overview

Window 5

Location 16,580,078 – 16,580,194
Length 116
Sequences 5
Columns 116
Reading direction forward
Mean pairwise identity 90.24
Mean single sequence MFE -34.68
Consensus MFE -30.77
Energy contribution -32.02
Covariance contribution 1.25
Combinations/Pair 1.00
Mean z-score -1.62
Structure conservation index 0.89
SVM decision value 1.24
SVM RNA-class probability 0.935133
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16580078 116 + 22407834
AUUUUUUUUUUGCUUGGGGUGCAUGGAGAGCGAAGAUUCCGCAUCAACGUCGUAGUCGUCAUCCUCGUGGCGUGUCUGCAUGCAAUUUGCAAGGGACAUGCGACAGAAAAAUGCAC
..................(((((((((..((((..((..((......))..))..))))..)))..((.((((((((.(.(((.....))).))))))))).))......)))))) ( -36.50)
>DroSec_CAF1 35347 107 + 1
---UUUUUUUU------GGUGCAUGGAGAGCGAAGAUUCCGCAUCAACGUCGUAGUCGUCAUCCUCGUGGCGUGUCUGCAUGCAAUUUGCAAGGGACAUGCGACAGAAAAAUGCAC
---........------.(((((((((..((((..((..((......))..))..))))..)))..((.((((((((.(.(((.....))).))))))))).))......)))))) ( -36.50)
>DroSim_CAF1 33297 107 + 1
---UUUUUUUU------GGUGCAUGGAGAGCGAAGAUUCCGCAUCAACGUCGUAGUCGUCAUCCUCGUGGCGUGUCUGCAUGCAAUUUGCAAGGGACAUGCGACAGAAAAAUGCAC
---........------.(((((((((..((((..((..((......))..))..))))..)))..((.((((((((.(.(((.....))).))))))))).))......)))))) ( -36.50)
>DroEre_CAF1 34146 107 + 1
---UUUUUUUG------GGUGGUUGGAGAGCGAAGAUUCCGCAUCAACGUCGUAGUCGUCAUCCUCGUGGCGUGUCUGCAUGCAAUUUGCAAGGGACAUGCGACAGAAAAAUGCAC
---((((((((------(((((((((...(((.......))).)))))..((....)).)))))..((.((((((((.(.(((.....))).))))))))).)))))))))..... ( -31.70)
>DroYak_CAF1 34418 93 + 1
---UUUUUUUG------GGUGGAUGGAGAGCGAA--------------GUCGUAGUCGUCAUCCUCGUGGCGUGUCUGCAUGCAAUUUGCAAGGGACAUGCGACAGAAAAAUGCAC
---(((((((.------.(.(((((..(((((..--------------..)))..))..))))).)((.((((((((.(.(((.....))).))))))))).)))))))))..... ( -32.20)
>consensus
___UUUUUUUU______GGUGCAUGGAGAGCGAAGAUUCCGCAUCAACGUCGUAGUCGUCAUCCUCGUGGCGUGUCUGCAUGCAAUUUGCAAGGGACAUGCGACAGAAAAAUGCAC
..................(((((((((..((((..((..((......))..))..))))..)))..((.((((((((.(.(((.....))).))))))))).))......)))))) (-30.77 = -32.02 +   1.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:45 2006