| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 16,579,403 – 16,579,509 |
| Length | 106 |
| Max. P | 0.699114 |
| Location | 16,579,403 – 16,579,509 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 82.60 |
| Mean single sequence MFE | -21.97 |
| Consensus MFE | -13.59 |
| Energy contribution | -14.87 |
| Covariance contribution | 1.28 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.44 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.699114 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16579403 106 - 22407834 CCAUACCUGUCGAGCUAAGUGCUUCAAAGUUGGCUCACAAAAAAGAA---GAAAGUAAUUAAAAUUAAUU----AUAUGGCAAAAUGGCUUCACCAAUGAAGUUAUUCAUUCA ((((...(((.(((((((.(.......).))))))))))........---....(((((((....)))))----))))))...((((((((((....))))))))))...... ( -23.50) >DroPse_CAF1 44050 93 - 1 CCAUACCUGCCCGGCGAAUUUCU--GAAGUAUUAUCA---AAA---G---CAAAGUAAUUAAUUUUAAUUACAAAUAUGCCAAAAUGCCUUCGACAGUGACGGC--------- ............((((.((((.(--((.......)))---...---.---....(((((((....))))))))))).)))).....(((.(((....))).)))--------- ( -14.30) >DroSec_CAF1 34627 105 - 1 CCAUACCUGUCGAGCCAAGUGCUUCAAAGUUGGCUCACAAAAAGGAA---GAAAGUAAUUAAAAUUAAUU----AUAUGGCAAAAUGGCUUCACCAAUGAAGUUAUUCAA-CA ((((.(((...(((((((.(.......).)))))))......)))..---....(((((((....)))))----))))))...((((((((((....))))))))))...-.. ( -26.30) >DroSim_CAF1 32577 105 - 1 CCAUACCUGUCGAGCCAAGUGCUUCAAAGUUGGCUCACAAAAAGGAA---GAAAGUAAUUAAAAUUAAUU----AUAUGGCAAAAUGGCUUCACCAAUGAAGUUAUUCAA-CA ((((.(((...(((((((.(.......).)))))))......)))..---....(((((((....)))))----))))))...((((((((((....))))))))))...-.. ( -26.30) >DroEre_CAF1 33348 108 - 1 CCAUACCUGUCGUGCAAAGUGCUUCAAAGUUGGCUCACAAAAAAGAAAAUGAAAGUAAUUAAAAUUAAUU----AUAUGGCAAAAUGGCUUCACCAAUGAAGUUAUACAA-AA .......((((((.....(.(((........))).)..................(((((((....)))))----))))))))..(((((((((....)))))))))....-.. ( -17.70) >DroYak_CAF1 33633 105 - 1 CCAUACCUGUCGAGCAAAGUACUUCAAAGUUGGCUCACAGAAAAGAA---GAAAGUAAUUAAAAUUAAUU----AUAUGGCAAAAUGGCUUCACCAAUGAAGUUAUUACA-CA ((((..((((.((((.....(((....)))..)))))))).......---....(((((((....)))))----))))))...((((((((((....))))))))))...-.. ( -23.70) >consensus CCAUACCUGUCGAGCAAAGUGCUUCAAAGUUGGCUCACAAAAAAGAA___GAAAGUAAUUAAAAUUAAUU____AUAUGGCAAAAUGGCUUCACCAAUGAAGUUAUUCAA_CA (((((......(((((((.(.......).)))))))....................(((((....))))).....)))))...((((((((((....))))))))))...... (-13.59 = -14.87 + 1.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:44 2006