Locus 5855

Sequence ID 2L_DroMel_CAF1
Location 16,578,784 – 16,578,883
Length 99
Max. P 0.638704
window9293

overview

Window 3

Location 16,578,784 – 16,578,883
Length 99
Sequences 5
Columns 99
Reading direction forward
Mean pairwise identity 87.17
Mean single sequence MFE -24.62
Consensus MFE -17.46
Energy contribution -18.06
Covariance contribution 0.60
Combinations/Pair 1.00
Mean z-score -1.84
Structure conservation index 0.71
SVM decision value 0.22
SVM RNA-class probability 0.638704
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16578784 99 + 22407834
UUUAAAUAGGCCAAUUUACGACUUUGAAGUGGCUCAGAGUUGAUUACAGUUUGAGUCGAACUGGAUCGAACAGUUUGAAAUCAUGUAAUUGUCACAAGA
........(((.......(((((((((......)))))))))((((((...(((.((((((((.......))))))))..))))))))).)))...... ( -25.80)
>DroSec_CAF1 33974 99 + 1
UUUAAAUAGGCCAAUUUACGACUUUGAAGUGGCUCAGAGUUGAUUACAGUUUGAGCCGCACUGGAUCGAACAGUUUGAACUCACGUAAUUGUCACAAGA
........(((....(((((........((((((((((.(((....)))))))))))))((((.......)))).........)))))..)))...... ( -26.30)
>DroSim_CAF1 31925 99 + 1
UUUAAAUAGGCCAAUUUACGACUUUGAAGUGGCUCAGAGUUGAUUACAGUUUGAGCCGAACUGGAUCGAACAGUUUGAACUCACGUAAUUGUCACAAGA
........(((....(((((..........((((((((.(((....)))))))))))((((((.......)))))).......)))))..)))...... ( -25.00)
>DroEre_CAF1 32768 79 + 1
UUUAAAUAGGCCAAUUUACGACUUUGAAGUGGCUGAGAGUUGAUUACAGUUUGAGUAGAACUGGAUCGAACAGUUUGAA--------------------
.((((((.(((((.((((......)))).)))))....(((((((.((((((.....)))))))))).))).)))))).-------------------- ( -19.20)
>DroYak_CAF1 33003 99 + 1
UUUAAAUAGGCCACUUUACGAGUUUGAAUGGGCUCAGAGUUGAUUACAGUUUGAGCCGAACUGGAUCGAACACUUUGAACUCACGUAGUUGUCACAAGA
........(((.(((....(((((..((((((((((((.(((....)))))))))))((......))...)).))..)))))....))).)))...... ( -26.80)
>consensus
UUUAAAUAGGCCAAUUUACGACUUUGAAGUGGCUCAGAGUUGAUUACAGUUUGAGCCGAACUGGAUCGAACAGUUUGAACUCACGUAAUUGUCACAAGA
(((((((.(((((.((((......)))).)))))....(((((((.((((((.....)))))))))).))).))))))).................... (-17.46 = -18.06 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:43 2006