Locus 5852

Sequence ID 2L_DroMel_CAF1
Location 16,577,127 – 16,577,240
Length 113
Max. P 0.500000
window9286

overview

Window 6

Location 16,577,127 – 16,577,240
Length 113
Sequences 6
Columns 117
Reading direction forward
Mean pairwise identity 81.92
Mean single sequence MFE -25.95
Consensus MFE -14.73
Energy contribution -16.35
Covariance contribution 1.62
Combinations/Pair 1.17
Mean z-score -2.02
Structure conservation index 0.57
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16577127 113 + 22407834
AUCGGUUGCAGCGCUGCAACUGAAGUGGUAAAUUUUAAGUGUUUAAAUUAUAUGAAAUUAAUCACAAACAAA----UGAAUUUCCAAUUGAUUGAGGUUGAGUGCUGAAUAUGAGUG
.(((....(((((((.(((((...(((((.(((((((.(((.......))).))))))).)))))...(((.----((......)).))).....))))))))))))....)))... ( -29.50)
>DroSec_CAF1 32289 113 + 1
AUCGGUUGCAGCGCUGCAACUGAAGUGGGAUAUUUUAUGUGUUUAAAUUAUAUGAAAUUAAUCACAAACAAA----UGAAUUUCCAAUUGAUUGAAGUUGAGUGCUGAAUAUGAGUG
.(((....(((((((.(((((...((((...((((((((((.......))))))))))...))))...(((.----((......)).))).....))))))))))))....)))... ( -31.10)
>DroSim_CAF1 30243 113 + 1
AUCGGUUGCAGCGCUGCAACUGAAGUGGGAUAUUUUAUGUGUUUAAAUUAUAUGAAAUUAAUCACAAACAAA----UGAAUUUCCAAUAGAUUGAAGUUGAGUGCUGAAUAUGAGUG
.(((....(((((((.(((((...((((...((((((((((.......))))))))))...)))).......----(.(((((.....))))).)))))))))))))....)))... ( -29.30)
>DroEre_CAF1 31218 113 + 1
AUCGUUUGCAGCGUUGCCACAGAAGUGGUAUAUUUUAUGAGUUUAAAUUAUAUGAAAUUAAUCAUAAGCAAA----UGCAUUUCAAAUUGAUUGAAGUUGAGUGCUGAAUAUGAUUG
(((((...(((((.((((((....))))))....((((((.((((.......)))).....))))))((...----.))(((((((.....)))))))....)))))...))))).. ( -23.30)
>DroYak_CAF1 31297 113 + 1
AUCGUCUGCAGCGAUGUAAAGGAAGUGGGAUAUUUUAUGAGCUUAAAUUAUAUGAAAUUAAUCACAAGCAAA----UGAUUUUAAAAUUGAUUGAAGUUGAGUGCUGAAUAUGAGUG
.((.(.((((....)))).).)).((((...((((((((...........))))))))...)))).((((..----(((((((((......)))))))))..))))........... ( -18.60)
>DroPer_CAF1 40584 103 + 1
AUCGGCUGCU--------------GUUGUUUAUUUGAUGUGCUUAAAUUAUAUGAAAUUAAUAACAAUCAAAUCAAUGGAUUUCCAAUUGAAUUCAGUGGGGAGUGGGUUGGGAGUG
....(((.((--------------((((((.((((.(((((.......))))).)))).))))))).......((((..((((((.((((....)))).))))))..))))).))). ( -23.90)
>consensus
AUCGGUUGCAGCGCUGCAACUGAAGUGGGAUAUUUUAUGUGUUUAAAUUAUAUGAAAUUAAUCACAAACAAA____UGAAUUUCCAAUUGAUUGAAGUUGAGUGCUGAAUAUGAGUG
.(((....(((((((.........((((...((((((((((.......))))))))))...))))...................(((((......))))))))))))....)))... (-14.73 = -16.35 +   1.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:36 2006