Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 16,571,107 – 16,571,205 |
Length | 98 |
Max. P | 0.846881 |
Location | 16,571,107 – 16,571,205 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 92.36 |
Mean single sequence MFE | -16.62 |
Consensus MFE | -13.80 |
Energy contribution | -13.76 |
Covariance contribution | -0.04 |
Combinations/Pair | 1.05 |
Mean z-score | -1.59 |
Structure conservation index | 0.83 |
SVM decision value | 0.77 |
SVM RNA-class probability | 0.846881 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16571107 98 - 22407834 ACGCCUUUACUCGCAUUGAGUGCAAACAGCAAUCUGGUUAUCUACUACCAUUUAUUUGCC-------CACACACGAGCACUCCAUCAUGCUUCUAUCUAAUCUCC ............((((.((((((.....((((..((((........)))).....)))).-------..(....).))))))....))))............... ( -16.90) >DroSec_CAF1 26021 98 - 1 AUGCCUUUACUCGCAUUGAGUGCAAACAGCAAUCUGGUUAUCUACUACCAUUUAUUAGCC-------CACACACGAGCACUCCAUCAUGCUUCUAUCUAAUCUCC ............((((.((((((.....(((((.((((........))))...))).)).-------..(....).))))))....))))............... ( -14.50) >DroSim_CAF1 24114 98 - 1 AUGCCUUUACUCGCAUUGAGUGCAAACAGCAAUCUGGUUAUCUACUACCAUUUAUUAGCC-------CACACACGAGCACUCCAUCAUGCUUCUAUCUAAUCUCC ............((((.((((((.....(((((.((((........))))...))).)).-------..(....).))))))....))))............... ( -14.50) >DroEre_CAF1 25567 98 - 1 AAGCCUUUAGCCGCAUUGAGUGCAAACAGCAAUCUGGUUAUCUACUGCCAUUUAUUAGCC-------CACACACGAGCACUCCUUCAUGCUGCUAUCUAAUCUAC .......((((.((((.((((((.....(((((.((((........))))...))).)).-------..(....).))))))....)))).)))).......... ( -20.00) >DroYak_CAF1 25500 105 - 1 AUGCCUUUGGCCGCAUUGAGUGCAAACAGCAAUCUGGUUAUCUACUGCCAUUUAUUAGCCAACACACCACACACGAGCAGUCCAUCAUGCUUCUAUCUAAUCUCC ......(((((......((.(((.....))).))((((........)))).......)))))............(((((........)))))............. ( -17.20) >consensus AUGCCUUUACUCGCAUUGAGUGCAAACAGCAAUCUGGUUAUCUACUACCAUUUAUUAGCC_______CACACACGAGCACUCCAUCAUGCUUCUAUCUAAUCUCC ............((((.((((((.....(((((.((((........))))...))).))..........(....).))))))....))))............... (-13.80 = -13.76 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:32 2006