Locus 585

Sequence ID 2L_DroMel_CAF1
Location 1,785,565 – 1,785,665
Length 100
Max. P 0.665612
window962

overview

Window 2

Location 1,785,565 – 1,785,665
Length 100
Sequences 4
Columns 118
Reading direction reverse
Mean pairwise identity 74.16
Mean single sequence MFE -24.75
Consensus MFE -13.11
Energy contribution -12.17
Covariance contribution -0.94
Combinations/Pair 1.48
Mean z-score -1.91
Structure conservation index 0.53
SVM decision value 0.28
SVM RNA-class probability 0.665612
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1785565 100 - 22407834
UUUUCACAGCCACUCCAUUUCCCCGAAUCCUUUUGACU--------------UGUGCAUAUUCUCCUUUUGGC-UUUAGAAUGGCCUCUUUUUC---GGGAGAAAGGGAAAUAAAUCU
................(((((((((((....))))...--------------........(((((((...(((-(.......))))........---))))))).)))))))...... ( -21.70)
>DroSec_CAF1 42510 100 - 1
UUUUCACAGCCACUCCAUUUCCCCGAAUCCUUUUGACU--------------UGUGCAUAUUCUCCUUUUGGC-UUUAGAAUGGCCUCCUUUUG---GGGAGAAAGGGAAAUAAAUCU
................(((((((((((....))))...--------------........((((((....(((-(.......)))).((....)---))))))).)))))))...... ( -23.60)
>DroYak_CAF1 53722 103 - 1
UUUUCACAGCCACUCCAUUUCCCCGAAUCCUUUCGACU--------------UGUGCAUAUUCUCCUUUUGGC-UUUAGAAUGGCCUCCUUUUUUGGAGGAGGAAGGGAAAUAAAUCU
................(((((((((((....))))...--------------........((((((....(((-(.......))))(((......))))))))).)))))))...... ( -27.00)
>DroAna_CAF1 46982 109 - 1
UUUUUAGAGCUACUCCUUUGCUCCAGAUGCUUUUGACUCUUGAGAGUGUGUUUUUGUGUGCUCUCCUUUCGGCAUUUUGCAUAGCCUCGUUUUG---GCUAAAACGAG------UUUG
...........((((...(((...(((((((...((.....(((((((..(....)..)))))))...))))))))).)))(((((.......)---))))....)))------)... ( -26.70)
>consensus
UUUUCACAGCCACUCCAUUUCCCCGAAUCCUUUUGACU______________UGUGCAUAUUCUCCUUUUGGC_UUUAGAAUGGCCUCCUUUUG___GGGAGAAAGGGAAAUAAAUCU
........((((.((........((((....)))).............................((....))......)).))))(((((((((.....))))))))).......... (-13.11 = -12.17 +  -0.94)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:17 2006