Locus 5849

Sequence ID 2L_DroMel_CAF1
Location 16,570,589 – 16,570,697
Length 108
Max. P 0.505580
window9281

overview

Window 1

Location 16,570,589 – 16,570,697
Length 108
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 90.27
Mean single sequence MFE -32.96
Consensus MFE -24.81
Energy contribution -24.49
Covariance contribution -0.32
Combinations/Pair 1.15
Mean z-score -1.52
Structure conservation index 0.75
SVM decision value -0.05
SVM RNA-class probability 0.505580
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16570589 108 + 22407834
CGAAUGUGUUUGUGUAAUAUCUCUGGCUUUUCCGGAGUAUCUGUGUGAGCCCAGAGCACAUUUG------------UGUGUGUGCUCCGUUGUGGUGCUACAUGAUGAGCUUUCUGACUU
.(((.((..(..((((.((((.(.(((((...(((.....)))...)))))..((((((((...------------...))))))))....).)))).))))..)...)).)))...... ( -32.50)
>DroSec_CAF1 25493 105 + 1
CGAGUGUGUUUGUGUAAUAUCUGUGGCUUUUCCGGAGUAUCUGUGUGAGCCCAGAGCACAUUUG------------UGUGCG--CU-AGUCGUGGUGCUACAUGAUGAGCUUUCUGACUU
(((((((((..........((((.(((((...(((.....)))...))))))))))))))))))------------.....(--((-.((((((......)))))).))).......... ( -33.50)
>DroSim_CAF1 23586 105 + 1
CGAGUGUGUUUGUGUAAUAUCUGUGGCUUUUCCGGAGUAUCUGUGUGAGCCCAGAGCACAUUUG------------UGUGCG--CU-AGUCGUGGUGCUACAUGAUGAGCUUUCUGACUU
(((((((((..........((((.(((((...(((.....)))...))))))))))))))))))------------.....(--((-.((((((......)))))).))).......... ( -33.50)
>DroEre_CAF1 25010 117 + 1
UGAGUGCGUUUGUGUAAUAUCUGUGGCUUUUCCGGAGUAUCUGUGUGAGCCCAGAGCAUAUUUGUCUGUGUGUGUGUGUGUG--CU-CGUCGUUGUGCCACAUGAUGAGCUUUCUGACUU
.(((((((..(((((....((((.(((((...(((.....)))...))))))))))))))..)))................(--((-((((((.(.....))))))))))......)))) ( -32.70)
>DroYak_CAF1 24978 105 + 1
UGAGUGUGUUUGUGUAAUAUCUGUGGCUUUUCCGGAGUAUCUGUGUGAGCCCAGAGCACAUUUG------------UGUGUG--CU-CGUCGUUGUGCUACAUGAUGAGCUUUCUGACUU
.((((((((..........((((.(((((...(((.....)))...))))))))))))))))).------------.....(--((-((((((.(.....)))))))))).......... ( -32.60)
>consensus
CGAGUGUGUUUGUGUAAUAUCUGUGGCUUUUCCGGAGUAUCUGUGUGAGCCCAGAGCACAUUUG____________UGUGUG__CU_CGUCGUGGUGCUACAUGAUGAGCUUUCUGACUU
.(((.((..(..((((...((((.(((((...(((.....)))...)))))))))(((((................))))).................))))..)...)).)))...... (-24.81 = -24.49 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:31 2006