Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 16,570,430 – 16,570,528 |
Length | 98 |
Max. P | 0.590467 |
Location | 16,570,430 – 16,570,528 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 83.13 |
Mean single sequence MFE | -20.05 |
Consensus MFE | -15.63 |
Energy contribution | -15.97 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.54 |
Structure conservation index | 0.78 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.590467 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16570430 98 + 22407834 ---UCUGGCUUUAUUCCCACAAAAU-UUCCAACAGCUUUUCAGCUGGCAACAGGUGAAAAUUCUCAUUUCGUUUUGGGGCUAAAUCAACUGUAAAAAAUUCG ---..(((.((((..(((.((((((-..........((((((.(((....))).))))))..........))))))))).)))))))............... ( -21.05) >DroPse_CAF1 32058 84 + 1 UC-CUUGGCU-----CGCGUA------------GGCCUUUGAGCUGGCAACAGGUGAAAAUUCUCAUUUCAUUUUGGGGCUAAAUCAACUGUAAAAAAUUCA ..-...((((-----......------------)))).((((..((((..(((((((((.......))))).))))..))))..)))).............. ( -18.60) >DroSim_CAF1 23427 98 + 1 ---UCUGGCUAUAUUCCCACAAAAU-UUCCAACAGCUUUUCAGCUGGCAACAGGUGAAAAUUCUCAUUUCGUUUUGGGGCUAAAUCAACUGUAAAAAAUUCA ---............(((.((((((-..........((((((.(((....))).))))))..........)))))))))....................... ( -19.85) >DroEre_CAF1 24847 102 + 1 UCCUCUGGCUUGAUUCCCACAGAAUUUUCCAACAGCUUUUCAGCUGGCAACAGGUGAAAAUACUCAUUUCAUUUUGGGGCUAAAUCAACUGUAAAAAAUUCA .....(((........)))..(((((((...((((.((((((.(((....))).))))))..((((........))))..........))))..))))))). ( -23.50) >DroYak_CAF1 24829 98 + 1 ---CCUGGCUAUAUUCCCAUAAAAU-UUCCAACAGCUUUUCAGCUGGCAACAGGUGAAAAUUCUCAUUUCAUUUUGGGGCUAAAUCAACUGUAAAAAAUUCA ---..(((........)))......-.....((((.((((((.(((....))).)))))).(((((........))))).........)))).......... ( -18.70) >DroPer_CAF1 33618 84 + 1 UC-CUUGGCU-----CUCGUA------------GGCCUUUGAGCUGGCAACAGGUGAAAAUUCUCAUUUCAUUUUGGGGCUAAAUCAACUGUAAAAAAUUCA ..-...((((-----......------------)))).((((..((((..(((((((((.......))))).))))..))))..)))).............. ( -18.60) >consensus ___CCUGGCU_UAUUCCCACAAAAU_UUCCAACAGCUUUUCAGCUGGCAACAGGUGAAAAUUCUCAUUUCAUUUUGGGGCUAAAUCAACUGUAAAAAAUUCA .....((((............................(((((.(((....))).)))))...((((........)))))))).................... (-15.63 = -15.97 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:30 2006