| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 16,568,820 – 16,568,926 |
| Length | 106 |
| Max. P | 0.527216 |
| Location | 16,568,820 – 16,568,926 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 80.62 |
| Mean single sequence MFE | -20.18 |
| Consensus MFE | -12.27 |
| Energy contribution | -12.47 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.61 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.527216 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16568820 106 - 22407834 AGAAAACUCUUGUUUGCCAAUAAUGAAAUGCAAUACAUAUCCAUC----CCAUC----GAAAUUAUUCACCGGGCAACGGGAAUAUCUUAAAACUUCAGAUGAACUCGAAGCAA------ .......(((((((.(((......((.(((.....))).))....----.....----(((....)))....))))))))))...........((((((.....)).))))...------ ( -14.40) >DroPse_CAF1 30690 115 - 1 CGGGGACUAUUGUUUGCCAAUAAUGAAAUGCAAUAUAUUUACAUG----CCAGCAACAGGAAUCAUUUAUUGGGCAACACGAAUUACUUAUAAU-UCAAGUAAUUUCCACCCCAAACCCC .((((.((.(((((.((.....((((((((.....))))).))))----).))))).))..........(((((......(((((((((.....-..)))))))))....))))).)))) ( -24.60) >DroSec_CAF1 23795 109 - 1 AGAAAACUCUUGUUUGCCAAUAAUGAAAUGCAAUACAUUUCCAUC----CCAUC----GAAAUCAUUAACGGGGCAACGGGAAUUUCUUAAAACUUCAGAUGAACUCAAAGCAAA-CG-- ...........((((((.......((((((.....))))))..((----((.((----(..........)))(....)))))............................)))))-).-- ( -18.40) >DroSim_CAF1 21881 109 - 1 AGAAAACUCUUGUUUGCCAAUAAUGAAAUGCAAUACAUUUCCAUC----CCAUC----GAAAUCAUUCACGGGGCAACGGGAAUUUCUUAAAACUUCAGAUGAACUCAAAGCAAA-CG-- ...........((((((.......((((((.....))))))..((----((...----(((....)))....(....)))))............................)))))-).-- ( -19.30) >DroEre_CAF1 23114 113 - 1 GGAAAACUCUUGUUUGCCAAUAAUGAAAUGCAAUACAUUUCCAUCCAGCCCAUC----GAAAUCAUUCAUGGGGCAACAGGAAUUUUUUAAAGCUGCAGAUAAACUCAAACCAAA-UA-- ((((((.(((((((.(((......((((((.....))))))........((((.----(((....))))))))))))))))).))))))..........................-..-- ( -23.50) >DroYak_CAF1 23145 102 - 1 AGUAAACUCUUGUUUGCCAAUAAUGAAAUGCAAUACAUUUCCAUC----CCAUU----GAAAUCAUUCAUGGGGCAACAGGAAAUUCUUAAAACUUCAGACGAACUCAAG---------- .......(((((((.(((......((((((.....))))))....----((((.----(((....)))))))))))))))))............................---------- ( -20.90) >consensus AGAAAACUCUUGUUUGCCAAUAAUGAAAUGCAAUACAUUUCCAUC____CCAUC____GAAAUCAUUCACGGGGCAACAGGAAUUUCUUAAAACUUCAGAUGAACUCAAAGCAAA_C___ .......(((((((.(((......((((((.....)))))).................(((....)))....))))))))))...................................... (-12.27 = -12.47 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:27 2006