Locus 5845

Sequence ID 2L_DroMel_CAF1
Location 16,568,425 – 16,568,528
Length 103
Max. P 0.915065
window9276

overview

Window 6

Location 16,568,425 – 16,568,528
Length 103
Sequences 5
Columns 111
Reading direction reverse
Mean pairwise identity 90.68
Mean single sequence MFE -11.19
Consensus MFE -10.95
Energy contribution -10.79
Covariance contribution -0.16
Combinations/Pair 1.05
Mean z-score -1.35
Structure conservation index 0.98
SVM decision value 1.10
SVM RNA-class probability 0.915065
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16568425 103 - 22407834
UCCAAAUAAUUGCCAACCAAAAGCCUUCAUCAGUCAUUUCUCCCCACUUUU---UUUUUU-----UUUUUGUGAACUCCUUUUGCGGCCAUUGUCUUUUCCUUUAAGCAAU
.....(((((.(((...((((((..((((.(((..................---......-----...)))))))...)))))).))).)))))................. ( -11.13)
>DroSec_CAF1 23387 103 - 1
UCCAAAUAAUUGCCAACCAAAAGCCUUCAUCAGUCAUUUCUCCCCACUUUU---UUUCCU-----UUUUUGUGAACUCCUUUUGCGGCCAUUGUCUUUUCCUUUAAGCAAU
.....(((((.(((...((((((..((((.(((..................---......-----...)))))))...)))))).))).)))))................. ( -11.13)
>DroSim_CAF1 21470 106 - 1
UCCAAAUAAUUGCCAACCAAAAGCCUUCAUCAGUCAUUUCUCCCCACUUUUUUUUUUCUU-----UUUUUGUGAACUCCUUUUGCGGCCAUUGUCUUUUCCUUUAAGCAAU
.....(((((.(((...((((((..((((.(((...........................-----...)))))))...)))))).))).)))))................. ( -11.01)
>DroEre_CAF1 22685 108 - 1
UCCAAAUAAUUGCCAACCAAAAGCCUUCAUCAGUCAUUUCUCCCCCUUUUU---UUUUUUUUUUGUUUUUGUGAACUCCUUUUGCGGCCAUUGUCUUUUCCUUUAAGCAAU
.....(((((.(((...((((((..((((.(((.((...............---.........))...)))))))...)))))).))).)))))................. ( -11.36)
>DroYak_CAF1 22761 93 - 1
UCCAAAUAAUUGCCAACCGAAAGCCUUCAUCAGUCAUUUCUUCCCCUUU------------------UUUGUGAACUCCUUUUGCGGCCAUUGUCUUUUCCUUUAAGCAAU
.....(((((.(((...((((((..((((.(((................------------------.)))))))...)))))).))).)))))................. ( -11.33)
>consensus
UCCAAAUAAUUGCCAACCAAAAGCCUUCAUCAGUCAUUUCUCCCCACUUUU___UUUCUU_____UUUUUGUGAACUCCUUUUGCGGCCAUUGUCUUUUCCUUUAAGCAAU
.....(((((.(((...((((((..((((.(((...................................)))))))...)))))).))).)))))................. (-10.95 = -10.79 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:26 2006