Locus 5844

Sequence ID 2L_DroMel_CAF1
Location 16,566,875 – 16,566,982
Length 107
Max. P 0.564206
window9275

overview

Window 5

Location 16,566,875 – 16,566,982
Length 107
Sequences 5
Columns 107
Reading direction reverse
Mean pairwise identity 83.10
Mean single sequence MFE -26.90
Consensus MFE -19.96
Energy contribution -22.08
Covariance contribution 2.12
Combinations/Pair 1.06
Mean z-score -1.57
Structure conservation index 0.74
SVM decision value 0.06
SVM RNA-class probability 0.564206
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16566875 107 - 22407834
AACUGACGAUUGUUGUGUUGACGAUUAUUAUUUGAUAACCAUGAAAAUCGUAUUUAUGGCGUACGGAUUUCCAAGAAUCCUUCUGUCAACAGACGAUAAGUAGGCAC
..(((...((((((.((((((((...............(((((((.......))))))).....((((((....))))))...))))))))))))))...))).... ( -27.00)
>DroSec_CAF1 21862 107 - 1
AGCUGACCAUUGUUGUGUUGGCGAUUAUUAUUUGAUAACCAUGAAAUGCGUAUUUAUGGCGUACGGAUUUCCAAGAAUCCUUCUGUCAACAGACGAUAAGUAGGCUC
((((.((.((((((.((((((((...............(((((((.......))))))).....((((((....))))))...))))))))))))))..)).)))). ( -27.30)
>DroSim_CAF1 19939 107 - 1
AGCUGACCAUUGUUGUGUUGGCGAUUAUUAUUUGAUAACCAUGAAAUGCGUAUUUAUGGCGUACGGAUUUCCAAGAAUCCUUCUGUCAACAGACGAUAAGUAGGCUC
((((.((.((((((.((((((((...............(((((((.......))))))).....((((((....))))))...))))))))))))))..)).)))). ( -27.30)
>DroEre_CAF1 20979 102 - 1
UGCUGACCAUUGUUGUGUUGGCGAUUGUUA-----UAACCAUGGCAUUCGUAUUUAUGGUGUACGGAUUUCCCGGAAUCCAUCUGUCAACAGACGAUAAGUAGGCUC
.(((.((.((((((.(((((((((.(((((-----(....)))))).))((((.......))))((((((....))))))....)))))))))))))..)).))).. ( -30.20)
>DroYak_CAF1 21287 85 - 1
UGCUGACCAUUGUUGUGUUGGAGAUUAUU----------------------AUUUACGGCGUACGGAUUUCUAAGAAUCCGUCUGUCAACAUAAGAUAAGUAGGCUA
.(((.((...(.(((((((..((((....----------------------))))..((((.((((((((....)))))))).))))))))))).)...)).))).. ( -22.70)
>consensus
AGCUGACCAUUGUUGUGUUGGCGAUUAUUAUUUGAUAACCAUGAAAUGCGUAUUUAUGGCGUACGGAUUUCCAAGAAUCCUUCUGUCAACAGACGAUAAGUAGGCUC
.(((.((.((((((.((((((((...............(((((((.......))))))).....((((((....))))))...))))))))))))))..)).))).. (-19.96 = -22.08 +   2.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:25 2006