| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 16,561,557 – 16,561,664 |
| Length | 107 |
| Max. P | 0.930281 |
| Location | 16,561,557 – 16,561,664 |
|---|---|
| Length | 107 |
| Sequences | 4 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 80.84 |
| Mean single sequence MFE | -23.24 |
| Consensus MFE | -15.80 |
| Energy contribution | -16.80 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.24 |
| Mean z-score | -2.17 |
| Structure conservation index | 0.68 |
| SVM decision value | 1.20 |
| SVM RNA-class probability | 0.930281 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16561557 107 + 22407834 GACUAUGAAAGUGAUUUAGCCAUAUA--CACAUAGAGAGUUGUGUUAGUAUCGAUAAGGCUUUAAAGAAUACGGGUUAAAUUAUAAAUGUAGUCGGAAAAAGUU---AAAUU (((((((...(((((((((((.....--.......(((((..((((......))))..)))))..........)))))))))))...)))))))..........---..... ( -23.45) >DroSec_CAF1 16427 109 + 1 GACUAUGAAAGUGAUUUAGCCAUAUAUAUGCACAGACAGUUGCGUUAGUGCCGAUACGGCUUUAAAGAAUACAAGUUAAAUAAUAAAUAUAGUCUAAAAAAGUU---AAAUU ((((((((((....)))((((.(((....((((.(((......))).))))..))).))))..........................)))))))..........---..... ( -20.20) >DroSim_CAF1 14491 109 + 1 GACUAUGAAAGUGAUUUAGCCAUAUUUGUGCACAGACAGUUGCGUUAGUGCCGAUAAGGCUUUAAAGAAUACAAGUUAAAUAAUAAAUAUAGUCUAAAAAAGUU---AAAUU ((((((((((....)))((((.((((.(.((((.(((......))).))))))))).))))..........................)))))))..........---..... ( -21.20) >DroEre_CAF1 15567 105 + 1 GACCAUGAAAGUGAUUUAGCCGUAUAAA--UACAGACAGUUGUGUUAGUGCAGCUAAGUCUUUAGGGAAUACGGGUUAAAUUAUGAAUGUGGCCAGAAGAAGUUUUA----- (.(((((...(((((((((((((((...--((.((((((((((......))))))..)))).))....)))).)))))))))))...))))).).............----- ( -28.10) >consensus GACUAUGAAAGUGAUUUAGCCAUAUAUAUGCACAGACAGUUGCGUUAGUGCCGAUAAGGCUUUAAAGAAUACAAGUUAAAUAAUAAAUAUAGUCUAAAAAAGUU___AAAUU (((((((...(((((((((((.......((((........))))((((.(((.....))).))))........)))))))))))...))))))).................. (-15.80 = -16.80 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:20 2006