| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 16,560,040 – 16,560,158 |
| Length | 118 |
| Max. P | 0.609669 |
| Location | 16,560,040 – 16,560,158 |
|---|---|
| Length | 118 |
| Sequences | 3 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 78.29 |
| Mean single sequence MFE | -20.61 |
| Consensus MFE | -17.31 |
| Energy contribution | -17.53 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.00 |
| Structure conservation index | 0.84 |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.609669 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16560040 118 - 22407834 GGAUUGUCGGCUCAUCAAUAGUUACGGCCAAGUUUUCCAUGGAACUCCCA-AAAAGCGUAAGCAUUUCAUUUUAUGCCUUAAAUGGUUUCCAACAUUUUAAUGAAUAAUAACGACAACA ...(((((((((.............))))..........(((((......-....((....))............(((......))))))))....................))))).. ( -20.42) >DroSec_CAF1 14868 112 - 1 -GAUUGUUGGCUCAUCAAUAGUUACGGCCAAGUUUUUCAUGAAACUCCCA-AAAAGCGUAAACAUUUCAUUUUAUGCUUUAAAUGGUUUCCAACAUUUUAAUGAAUAAUAACAU----- -...((((((...((((........((...((((((....)))))).)).-.((((((((((........))))))))))...))))..))))))...................----- ( -21.70) >DroSim_CAF1 12923 113 - 1 -GAUUGUUGGCUCAUCAAUAGUUACGGCCAAGUUUUUCAUGAAACUCCCANAAAAGCGUAAGCAUUUCAUUUUAUGCUUUAAAUGGUUCCAGNNNNNNNNNNNNNNNNNNNNNN----- -(((((((((....)))))))))..(((((((((((....))))))......((((((((((........))))))))))...)))))..........................----- ( -19.70) >consensus _GAUUGUUGGCUCAUCAAUAGUUACGGCCAAGUUUUUCAUGAAACUCCCA_AAAAGCGUAAGCAUUUCAUUUUAUGCUUUAAAUGGUUUCCAACAUUUUAAUGAAUAAUAAC_______ .(((((((((....)))))))))..(((((((((((....))))))......((((((((((........))))))))))...)))))............................... (-17.31 = -17.53 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:19 2006