| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 16,557,308 – 16,557,406 |
| Length | 98 |
| Max. P | 0.526015 |
| Location | 16,557,308 – 16,557,406 |
|---|---|
| Length | 98 |
| Sequences | 3 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 83.58 |
| Mean single sequence MFE | -22.80 |
| Consensus MFE | -19.56 |
| Energy contribution | -19.57 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.24 |
| Structure conservation index | 0.86 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.526015 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16557308 98 - 22407834 ACAUGGCAACAAAGUUGCA--------------AAAAUCGAAGAAGUCCAUAAGACCACAGCGUGUGGCGGACCAGUGGAAAAAUCUACAUUCAAAAUGAGCGAAGCUAUGA .((((((.......((((.--------------............((((....(.((((.....)))))))))..(((((....)))))...........)))).)))))). ( -22.80) >DroSec_CAF1 11842 111 - 1 ACAUAGCAACAAAGUUGCAUGGGGCCAAACAUAAAAAUCG-AGAAGUCCAUAAGACCACAGCGUGUGGCGGACCAGUGGAAAAAUCUACAUUCAAAAUGAGCGGAGCUAUGA .((((((......((..((((((((...............-....))))....(....)..))))..))...((.(((((....))))).(((.....))).)).)))))). ( -25.31) >DroEre_CAF1 11670 101 - 1 -----GCAACAAAGUUGCAUGGGGCCAAACAUAAAAAUCG-AGAAGUCCAUAAGACCACAGCGUGUGGCGGACCAGUGGAAAAAUCUACAUUGAAAAUGAGCGGAGC----- -----(((((...))))).....((((.............-....((((....(.((((.....)))))))))..(((((....)))))........)).)).....----- ( -20.30) >consensus ACAU_GCAACAAAGUUGCAUGGGGCCAAACAUAAAAAUCG_AGAAGUCCAUAAGACCACAGCGUGUGGCGGACCAGUGGAAAAAUCUACAUUCAAAAUGAGCGGAGCUAUGA .((((((.......((((...........................((((....(.((((.....)))))))))..(((((....)))))...........)))).)))))). (-19.56 = -19.57 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:16 2006