Locus 5834

Sequence ID 2L_DroMel_CAF1
Location 16,553,792 – 16,553,896
Length 104
Max. P 0.593054
window9257

overview

Window 7

Location 16,553,792 – 16,553,896
Length 104
Sequences 5
Columns 104
Reading direction reverse
Mean pairwise identity 92.31
Mean single sequence MFE -28.03
Consensus MFE -21.82
Energy contribution -22.34
Covariance contribution 0.52
Combinations/Pair 1.12
Mean z-score -1.55
Structure conservation index 0.78
SVM decision value 0.12
SVM RNA-class probability 0.593054
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16553792 104 - 22407834
GUGAAAUGGGCGAUCACAAGUUGAACUUGGAUAAACACAGGGGCCAAGUUUUAGGCCUCAAUUAUUUACACCUUUCGGAUUGGCAAUGCCUGAAACGAAACGGA
(((((.(((...(((.((((.....)))))))...).))((((((........)))))).....))))).(((((((....(((...))).....))))).)). ( -30.30)
>DroSec_CAF1 8284 104 - 1
GUGAAAUGGGCGACCACAAGUUGAACUUGGAUAAACACUGGUGCCAAGUUUUAGGCCUCAAUUAUUUACACCUUUCGGAUUGGCAAUGCCUGAAACGAAACGGA
(((((.(((....)))...(((((((((((....((....)).))))))))..)))........))))).(((((((....(((...))).....))))).)). ( -26.00)
>DroSim_CAF1 8235 104 - 1
GUGAAAUGGGCGACCACAAGUUGAACUUGGAUAAACACAGGAGCCAAGUUUUAGGCCUCAAUUAUUUACACCUUUCGGAUUGGCAAUGCCUGAAACGAAACGGA
(((((.(((....)))..((((((.((((........)))).(((........))).)))))).))))).(((((((....(((...))).....))))).)). ( -27.30)
>DroEre_CAF1 8123 104 - 1
GUGAAACGAACACCCACAAGUUGAACUUGGAUAAACACAGAGGCCAAGUUUUAGGCCUCAAUUAUUUACACCUUUCGGAUUGGCAAUGCCUGCAACGAAACGGA
(((((...........((((.....))))..........((((((........)))))).....))))).(((((((....(((...))).....))))).)). ( -28.30)
>DroYak_CAF1 8130 104 - 1
GUGAGUCGAACGUCCACAAGUUGAACUUGGAUAAACCCAGGGUCAAAGUUUUAGGCCUCAAUUAUUUACACCUUUCAGAUUGGCAAUGCCUGAAACGAGACGGA
..........(((((.....((((.(((((......))))).)))).(((((((((.((((((..............))))))....)))))))))).)))).. ( -28.24)
>consensus
GUGAAAUGGGCGACCACAAGUUGAACUUGGAUAAACACAGGGGCCAAGUUUUAGGCCUCAAUUAUUUACACCUUUCGGAUUGGCAAUGCCUGAAACGAAACGGA
(((((...........((((.....))))..........((((((........)))))).....))))).(((((((....(((...))).....))))).)). (-21.82 = -22.34 +   0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:08 2006