Locus 5831

Sequence ID 2L_DroMel_CAF1
Location 16,549,269 – 16,549,361
Length 92
Max. P 0.819338
window9253

overview

Window 3

Location 16,549,269 – 16,549,361
Length 92
Sequences 6
Columns 92
Reading direction forward
Mean pairwise identity 79.93
Mean single sequence MFE -23.57
Consensus MFE -15.65
Energy contribution -16.52
Covariance contribution 0.87
Combinations/Pair 1.38
Mean z-score -1.81
Structure conservation index 0.66
SVM decision value 0.68
SVM RNA-class probability 0.819338
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16549269 92 + 22407834
AGCAGACGACAGACAGCUGUUGCGAAAUGUGAUUUGCAUAUGGUUAAUUCACAAGAAUUAAAGCCAAGCCCGGCUGGAGCAGUCUAAAUAUC
...((((..(...((((((.((((((......))))))..((((((((((....))))))..))))....))))))..)..))))....... ( -25.30)
>DroPse_CAF1 5099 79 + 1
AG-AGGAG--ACACAGCUGUUACGGCGAGUGAUUUGAAUUUGCC-AAUCUUUAAAGGGAAAAGGCAAA-----UCGAUG----CUAAAGAUC
..-.(...--.)..(((.(((((.....)))))((((.((((((-..((((....))))...))))))-----)))).)----))....... ( -16.90)
>DroSec_CAF1 3651 90 + 1
AGCAGACA--AGACAGCUGUUGCGAAAUGUGAUUUGCAUAUGGUUAAUUCACAAGAAUUAAAGCCAAGCCCGGUUGGAGCUGUCUAAAUAUC
........--((((((((..((((((......))))))..((((((((((....))))))..))))...........))))))))....... ( -24.40)
>DroSim_CAF1 3644 90 + 1
AGCAGACA--AGACAGCUGUUGCGAAAUGUGAUUUGCAUAUGGUUAAUUCACAAGAAUUAAAGCCAAGCCCGGUUGGAGCUGUCUAAAUAUC
........--((((((((..((((((......))))))..((((((((((....))))))..))))...........))))))))....... ( -24.40)
>DroEre_CAF1 3645 90 + 1
AGCAGACG--AGGCAGCUGUUGGAAAAUGUGAUUUGCCUAUGGUUAAUUCACAAGAAUUAAAGCCAGGCCCGGUCGAAGCUGUCUAAAUAUC
........--(((((((((((....))).(((((.((((..(((((((((....))))))..)))))))..))))).))))))))....... ( -25.50)
>DroYak_CAF1 3573 90 + 1
AGCAGGCA--GGACAGCUGUUGCGAAAUGUGAUUUUCAUUUGGUUAAUUCACAAGAAUUAAAGCCAGGCCCGUUCGGAGCUGUCUAAAUAUC
........--((((((((...((((((......))))..(((((((((((....))))))..)))))))((....))))))))))....... ( -24.90)
>consensus
AGCAGACA__AGACAGCUGUUGCGAAAUGUGAUUUGCAUAUGGUUAAUUCACAAGAAUUAAAGCCAAGCCCGGUCGGAGCUGUCUAAAUAUC
..........((((((((..((((((......))))))..((((((((((....))))))..))))...........))))))))....... (-15.65 = -16.52 +   0.87)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:04 2006