| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 16,547,753 – 16,547,848 |
| Length | 95 |
| Max. P | 0.841402 |
| Location | 16,547,753 – 16,547,848 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 86.13 |
| Mean single sequence MFE | -23.67 |
| Consensus MFE | -19.56 |
| Energy contribution | -20.45 |
| Covariance contribution | 0.89 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.30 |
| Structure conservation index | 0.83 |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.841402 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16547753 95 - 22407834 GACUU-------CAUAAAAUACCUCG--UUCGUGUUUUAUGGCUGUGCACAGUGACAAGUGUUAAAAUAACAUUUGUACUGCAUUUUAAAUGGCAUUUUGAGAA ....(-------((((((((((....--...)))))))))))..((((.(((((.(((((((((...))))))))))))))(((.....)))))))........ ( -24.00) >DroSec_CAF1 2130 95 - 1 GACUU-------CAUAAAAUACCUCG--UUCGUGUUUUAUGGCUGUGCACAGUGACAAGUGUUAAAAUAACAUUUGUACUGCAUUUUAAAUGGCAUUUUGAGCA .....-------((((((((((....--...))))))))))(((((((.(((((.(((((((((...))))))))))))))(((.....)))))))....))). ( -26.50) >DroSim_CAF1 2120 95 - 1 GACUU-------CAUAAAAUACCUCG--UUCGUGUUUUAUGGCUGUGCACAGUGACAAGUGUUAAAAUAACAUUUGUACUGCAUUUUAAAUGGCAUUUUGAGCA .....-------((((((((((....--...))))))))))(((((((.(((((.(((((((((...))))))))))))))(((.....)))))))....))). ( -26.50) >DroEre_CAF1 2004 97 - 1 GACUU-------CAUACAAUACUUCGUGUUGGUGUUUUAUGGCUGUGCACAGUGACAAGUGUUAAAAUAACAUUUGUACUGCAUUUUAAAUGGCAUUUCGAGCA .....-------((((.((((((.......)))))).))))(((((((.(((((.(((((((((...))))))))))))))(((.....)))))))....))). ( -25.00) >DroYak_CAF1 2065 95 - 1 GACUU-------CAUAAAAUACUUCG--UUCGUGUUUUAUGGCUGUGCACAGUGACAAGUGUUAAAAUAACAUUUGUACUGCAUUUUAAAUGGCAUUUCGAGAA ..(((-------((((((((((....--...))))))))))(..((((.(((((.(((((((((...))))))))))))))(((.....)))))))..)))).. ( -25.30) >DroPer_CAF1 2427 94 - 1 CUUUCCUUUGAGCAUAAAAAAAAUCCUAGUCAUGUUUUGU--UUGGGCACACUGACAAGUGUUAAAAUAACAUUUGCACUGCAUUUUAAAUGGCA--------A ....((((((((............(((((.((.....)).--)))))..((.((.(((((((((...))))))))))).))...)))))).))..--------. ( -14.70) >consensus GACUU_______CAUAAAAUACCUCG__UUCGUGUUUUAUGGCUGUGCACAGUGACAAGUGUUAAAAUAACAUUUGUACUGCAUUUUAAAUGGCAUUUUGAGCA ............((((((((((.........))))))))))...((((.(((((.(((((((((...))))))))))))))(((.....)))))))........ (-19.56 = -20.45 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:03 2006