Locus 5829

Sequence ID 2L_DroMel_CAF1
Location 16,539,266 – 16,539,370
Length 104
Max. P 0.753132
window9251

overview

Window 1

Location 16,539,266 – 16,539,370
Length 104
Sequences 5
Columns 108
Reading direction forward
Mean pairwise identity 81.50
Mean single sequence MFE -24.30
Consensus MFE -18.66
Energy contribution -19.94
Covariance contribution 1.28
Combinations/Pair 1.04
Mean z-score -1.71
Structure conservation index 0.77
SVM decision value 0.48
SVM RNA-class probability 0.753132
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16539266 104 + 22407834
---AUUCCAGAAUAGUUCCGGAAAUGACUUGAAACUGUAUUUCCGGCUUUCACAUUUAAUUU-ACAUUUUAGCGUGGACACCUACCGCAAUGGUUUGGUUAUAUGCUA
---......(((.((..(((((((((.(........)))))))))))))))...........-......(((((((...(((.(((.....)))..)))..))))))) ( -24.20)
>DroSec_CAF1 51192 104 + 1
---AUUCGAGAUUAGUUCCGGAAAUGCCUUAAAACUGUAUUUCCGGCUUUCACAUUCAAUAA-ACAGACUAGCGUGGACACCUACCGCAAUGGUUUGGUAAUAUGCUA
---.........((((.((((((((((.........))))))))))................-.(((((((..((((.......))))..))))))).......)))) ( -25.90)
>DroSim_CAF1 38357 104 + 1
---AUUCGAGAUUAGUUCCGGAAAUGCCUUAAAACUGUAUUUCCGGCUUUCACAUUCAAUAA-ACAGACUAGCGUGGACACCUACCGCAAUGGUUUGGUAAUAUGCUA
---.........((((.((((((((((.........))))))))))................-.(((((((..((((.......))))..))))))).......)))) ( -25.90)
>DroEre_CAF1 61598 98 + 1
CUAGUCCUAGAAUAGUUCCUGAAAUGCUUUAAAACUGUAUUUC----------AGUCAAUUUCAUAAUUUAGCGUGGACACACACCGCAAUGGUUCGGUAAUAUGCUA
.........(((...(..(((((((((.........)))))))----------))..)..)))......(((((((....)))((((........)))).....)))) ( -21.00)
>DroYak_CAF1 44335 107 + 1
UUAAUCCUAUAGUAGUUUCGGAAAUGCUCUAAAACUGUAUUUCCGGCCCUCACAUUCAAUUU-ACAUUUUAGCGUGGACCCCUACCGCAUUGGUUUGGUAAUUUGCUA
...........((((..((((((((((.........))))))))))..)).)).........-......(((((...(((...(((.....)))..)))....))))) ( -24.50)
>consensus
___AUUCGAGAAUAGUUCCGGAAAUGCCUUAAAACUGUAUUUCCGGCUUUCACAUUCAAUUU_ACAGUUUAGCGUGGACACCUACCGCAAUGGUUUGGUAAUAUGCUA
.................((((((((((.........)))))))))).......................(((((((...(((.(((.....)))..)))..))))))) (-18.66 = -19.94 +   1.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:02 2006