Locus 5827

Sequence ID 2L_DroMel_CAF1
Location 16,523,434 – 16,523,524
Length 90
Max. P 0.518887
window9248

overview

Window 8

Location 16,523,434 – 16,523,524
Length 90
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 77.02
Mean single sequence MFE -41.95
Consensus MFE -15.79
Energy contribution -14.43
Covariance contribution -1.36
Combinations/Pair 1.50
Mean z-score -2.23
Structure conservation index 0.38
SVM decision value -0.03
SVM RNA-class probability 0.518887
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16523434 90 - 22407834
AUCCCGUUUCCUCAUCCGCU---GCCGCUGCCGCCCACAACGGGCUAAACGGACUGGCUGCCGCG---------GCAGCGG---CCUACGAAAGCGGUACGAUUG
...(((((((.....(((((---(((((.((.(((.....((.......))....))).)).)))---------)))))))---.....).))))))........ ( -38.90)
>DroPse_CAF1 31989 96 - 1
AUCCUGUUGCUACCUCGGCGGCGGCCGCAGCCAACCACAAUGGGCUCAAUGGACUGGCUGCAGCG---------GCAGCGGCUGCCUACGAGAGCAGCACCAUUG
....(((((((..((((..((((((((((((((.(((...((....)).)))..))))))).((.---------...)))))))))..)))))))))))...... ( -46.70)
>DroSec_CAF1 35193 90 - 1
AUCCCGUUUCCUCAUCCGCU---GCCGCCGCCGCCCACAACGGGCUGAACGGACUGGCCGCCGCG---------GCAGCGG---CCUACGAAAGCGGUACGAUUG
...(((((((.....(((((---(((((.((.((((.....)))).....((.....)))).)))---------)))))))---.....).))))))........ ( -40.40)
>DroYak_CAF1 28797 90 - 1
AUCCCGUUUCCUCAUCCGCA---GCCGCUGCCGCCCACAACGGUCUGAACGGACUGGCUGCCGCG---------GCAGCGG---CCUACGAGAGCGGUACGAUUG
....(((.(((((.((....---(((((((((((...((.((((((....))))))..))..)))---------)))))))---)....))))).)).))).... ( -41.60)
>DroAna_CAF1 35961 99 - 1
AUCCCGUCUUAUCCUCUGCC---GCUGCUGCUGCCCAUAAUGGGCUUAAUGGCUUGGCGGCAGCGGCCGUGGCGGCGGCUG---CCUAUGAAAGCGGUACGAUAG
.........((((...((((---(((((((((((((.....)))).....)))..)))((((((.((((...)))).))))---))......))))))).)))). ( -44.20)
>DroPer_CAF1 32097 96 - 1
AUCCUGUUGCCACCUCGGCGGCCGCAGCAGCCAACCACAAUGGGCUCAAUGGACUGGCUGCAGCG---------GCAGCGGCUGCCUACGAGAGCAGCACCAUUG
....((((((...((((((((((((.(((((((.(((...((....)).)))..))))))).(..---------.).)))))))))...))).))))))...... ( -39.90)
>consensus
AUCCCGUUUCCUCAUCCGCG___GCCGCUGCCGCCCACAACGGGCUCAACGGACUGGCUGCAGCG_________GCAGCGG___CCUACGAAAGCGGUACGAUUG
.......................(((((..(((.......)))......((....((((((.((..........)).))))...))..))...)))))....... (-15.79 = -14.43 +  -1.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:59 2006