| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 16,521,385 – 16,521,494 |
| Length | 109 |
| Max. P | 0.972188 |
| Location | 16,521,385 – 16,521,494 |
|---|---|
| Length | 109 |
| Sequences | 5 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 72.60 |
| Mean single sequence MFE | -28.32 |
| Consensus MFE | -7.86 |
| Energy contribution | -9.54 |
| Covariance contribution | 1.68 |
| Combinations/Pair | 1.23 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.28 |
| SVM decision value | 1.69 |
| SVM RNA-class probability | 0.972188 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16521385 109 + 22407834 ACAGCAAAACAAAGAGCCAGUUCGUAGCGGAG--UUUCGAGACCC-GAAGUUGCCAGUUAGUAUGAAUCAUUAAUUGGU-------UAAAAGUCAAUAGCUACGGUGGUUUUUUGUUAA .......((((((((((((..(((((((((.(--((....)))))-((....((((((((((.......))))))))))-------......))....))))))))))))))))))).. ( -37.40) >DroSec_CAF1 33111 109 + 1 ACAGCAAAACAAAGAGCCAGUUCGCAGCGGAG--UUUCGAGACUC-CAAGUUGCCAGUUAGUAUGAUUCAUUAAUUGGU-------UAAAAGUCAAUAGCUACGGUGGUUUUUUGUUAA .......((((((((((((..(((.(((((((--((....)))))-).....((((((((((.......))))))))))-------............))).))))))))))))))).. ( -36.30) >DroEre_CAF1 38656 109 + 1 ACAGCAAAACAAAGAGCCAGUUCAGAGCGGAGAAGUUGGCCAGAC-CAAGUUGCCAGUUAGUAUGAUUCAUUAAUUGGU-------UAAAAGCCAAUGGCUAUGCUGGUU--UUGUAAA ...(((((((...(((....)))..((((.((..((((((..(((-...)))((((((((((.......))))))))))-------.....))))))..)).)))).)))--))))... ( -30.20) >DroYak_CAF1 26723 107 + 1 ACAGCAAAACAAAGAGCCAGUUCAGUACGGAG--UUUGGAGAGCC-GAAGUUGCCAGUGAGUAUGAUUCAUUAAUUGGU-------UUAAAGUCGAUAGCUACUAUGGUU--UUGUUAA ..((((((((...(((((((((......((..--(((((....))-)))....))(((((((...))))))))))))))-------))..(((.....)))......)))--))))).. ( -23.90) >DroAna_CAF1 34095 104 + 1 ACAACA--GCCAAGUGGCA----CGAAUGGAG--UUUUAAGACCUACAAGUUACUAAAGAAAUGGAUUUCUUAAUUGACAAUAUACUAAAAAUUAA-----AUACGGGUU--UUGCAAA ......--(((....))).----.........--...((((((((....((((.(.((((((....)))))).).))))(((.........)))..-----....)))))--))).... ( -13.80) >consensus ACAGCAAAACAAAGAGCCAGUUCAGAGCGGAG__UUUCGAGACCC_CAAGUUGCCAGUUAGUAUGAUUCAUUAAUUGGU_______UAAAAGUCAAUAGCUACGCUGGUU__UUGUUAA ........((((..(((((.................................((((((((((.......))))))))))...........(((.....)))....)))))..))))... ( -7.86 = -9.54 + 1.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:58 2006